Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00888 ATGGGTTCGCCAAAAAATGGTCAAAATGTGAGCTTTAATGCTCCGAGGTCATTTGGGAAGAGGCTGAAATCGGATCTGAAAGAGACGTTTTTCCCTGATGATCCATTCAGGCAGATTCGAAATGAAAGTGGTGCAATAGAAAGAGTGAAAAAAGGGTTTCAATATTTCATACCCATATTGGAATGGCTTCCTAAATATAATTTGAATATGTTTAAATATGATTTGCTTGCTGGTATTACCCTTACCAGTGTTGCTATTCCCCAAGGCATTAGTTATGCAAAACTCGGTCAACTCCCTCCCATCATCGGCCTTTATTCCAGCTTCGTTCCGCCGATTATATATGCGGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCGGCTTGTTCGTTGCTCATAGCGGAAATTATTGGTGAAGTTGCTTCGCCGGAACAAGAACCCACATTGTATCTCCACTTGGTTTTTACTGCCACTCTTATCACCGGCATCATGCAGACCGCCTTAGGCTGTCTAAGATTAGGAATTTTGGTGGATTTCTTATCACACTCGACAATCCTTGGGTTTATGGGAGGAACAGCTGTGATCATTTCCCTTCAACAACTCAAAGGCATATTTGGACTCACTCATTTCACCTCTAAAACTAACGCTTATTCTGTACTTCATGCCGTTTTCTCTATGAGAAAAGAGTGGAAATGGCAAAGTATTGTGATGGGCATCATTTTCCTTGCATTTCTCCAGTTTACTAGGTTCTTGAGAAACAGAAACCCGAAGCTATTTTGGGTGTCAGCAATGGCTCCCATGGTGACAGTAATAATAGGGTGTTTGTTTGCGTATTTCATGAATGCAAGTCAGCATGGAATCGCAATTGTGGGCCATTTGAACAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTTGACTCCAAATATCTATCAGCTGTAGTACAAGCTGGCTCCATCACTGGCCTTGTCGCTTTGGCTGAAGGAATAGCAATTGGTCGAAGCTTTGCCATAATGAAAAATGAACAAATCGATGGGAATAAAGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACTGCAGTGAACTTCAATGCTGGGTGTAAGACAGCAATGTCAAACGTAGTTATGGCAATCTTCATGGCCCTCACCCTCCTTTTTTTAGCTCCTCTCTTCAGCTACACACCTCTTGTAGCCCTTTCCGCCATTATTATGTCTGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGACAAATTCGATTTCTGCATTTGTATGGCGGCTTTCTTGGGTGTTACCTTCTTAACCATGGATGTTGGACTCATGCTTTCGGTGGGACTTGCTTTGCTGAGAGCTCTTCTTTATATGGCTAGACCAGCTACTTGTAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGACGTGGAGCAGTATCCTAATGCAACCAAAGCCCATGGAATTATTGTTCTTCAACTTGGTTCCCCTGTTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGCGCAAGACGATGTCGAAGATGGATCCGTCGAACATGTACTCCTGGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTCGAAATCCGCAGAACATTACAAGCAAACGGAATCCAGATGGGAATTATAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCGGAATTCACAGACATGATCGGGAAAGAGAATATCTATTTGTCGGTAGACGATGGAGTGGAAAGGTGCAGAAATTTGGTGCCGAAATTAAAACAAACAGAAACAAGTGCTCGAAGTTCGAACGTGACGACAATGGAGCAGCGAGTATAA 1947 42.63 MGSPKNGQNVSFNAPRSFGKRLKSDLKETFFPDDPFRQIRNESGAIERVKKGFQYFIPILEWLPKYNLNMFKYDLLAGITLTSVAIPQGISYAKLGQLPPIIGLYSSFVPPIIYAVFGSSKHLAVGTVAACSLLIAEIIGEVASPEQEPTLYLHLVFTATLITGIMQTALGCLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTNAYSVLHAVFSMRKEWKWQSIVMGIIFLAFLQFTRFLRNRNPKLFWVSAMAPMVTVIIGCLFAYFMNASQHGIAIVGHLNKGINPLSIHFLNFDSKYLSAVVQAGSITGLVALAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCKTAMSNVVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVTFLTMDVGLMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATKAHGIIVLQLGSPVYYANSNYIRERIFRWVRDAQDDVEDGSVEHVLLELSGVTSIDMTGIETLVEIRRTLQANGIQMGIINPRIVVMEKMIASEFTDMIGKENIYLSVDDGVERCRNLVPKLKQTETSARSSNVTTMEQRV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18485412 18488645 + Lsi06G008880.1 Lsi06g00888 665618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00888 648 Pfam STAS domain 503 617 IPR002645 -
Lsi06g00888 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Lsi06g00888 648 PANTHER SULFATE TRANSPORTER 6 631 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi06g00888 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
Lsi06g00888 648 Gene3D STAS domain 482 625 IPR036513 -
Lsi06g00888 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016021
Lsi06g00888 648 TIGRFAM sulP: sulfate permease 58 617 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lsi06g00888 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Lsi06g00888 648 SUPERFAMILY SpoIIaa-like 504 623 IPR036513 -
Lsi06g00888 648 PANTHER SULFATE TRANSPORTER 3.5-RELATED 6 631 IPR030316 GO:1902358
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01632 Lsi-Chr5:23958804 Lsi06g00888 Lsi-Chr6:18485412 0 dispersed
Lsi06g00888 Lsi-Chr6:18485412 Lsi09g00959 Lsi-Chr9:12534076 0 dispersed
Lsi02g02778 Lsi-Chr2:34041681 Lsi06g00888 Lsi-Chr6:18485412 5.56E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00888 K17471 - csv:116402148 1125.92