Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00890 ATGAATCCTAAATCCCACTTCTCCCTCCTCCTCCTCTTCCTCCGCCTCTCCACCGCCCTCTCCACCGTCGGCCATGGCAGCCTCTCTGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTTCGGTGACCGTGGCGAACAAATCACAGTCGACCCATCTCTTGTTTTCGAAAACGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAATTAGCCATTTTATCCGACCCTCTTAATCAGACCGCCAATTGGGTCGGATCCAATGTCTGCAGCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCAAAAATACGCACCGTCGCCGGAATCGATCTCAACCATGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGCACTTTACCCCACAAATTTGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTTAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAACGAATTTGAAGGGAATGTGCCTAGAGAGCTGTTCGACAAGGATTTAGACGCCATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCCGTGATTGTGCTTGCGAACAATAAGTTCCATGGGTGTGTTCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTATGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACAGTGTTTGATGTTAGTTCGAATGAGTTGGTGGGTCCGTTGCCGGAGACTTTTGGTGGGCTTGTGAGCTTGGAGCAACTCAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTGAGTTGCCTAAGCTTCAAAACTTTACGTTCTCCAACAACTTCTTCTCTGGTGAGCCACCGGCGTGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGACGGCCGGTGCAGCGGCCAACTGGGCAATGTAGGGCGTTCTCGTCGAGAGCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCGTCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCAGTAGTTTCGCCCTCTTCGCCTCCGTCACCGGCAGGGGCGGTGTCTCCTCCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCGCCGCTCTCGCCCCATTTTCCTCCTCTGTCTCCACAATCGCCACCGTCGCCGCCTTCTTCACCATCTACACCGTCGTCGCCTTCTTCCCCATCTACGCCGTCACAGCCGTCGACACCGTCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCAACTCCTTCCACGCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCAAGGTCATGCTCCGCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGCCATACTCCGCCGGCATTGCCTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCACCAGGTCCACCTTCGTCCGAGCCCTCTCCACCATCGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCGGAGCCCTCACCTTCATCCCCGCCACAAGGTCACACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCTTCACCGCCACAAGGCCATGTTCCGCCTTCGGAGCCTTCTCCTCCCGGAACAGTATCGCCACCAGCACCGCCATTCCCAGTTTACACTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCCACACAACCTCCGGTCTACTGCCCACGATCTCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTTAATCACCCCAACACTCCTCCGCCACCGTCGCAGCCGCTACCAGTTTATTCTCCCCCTCCCCCTGTTCATACATCCCCGTCGCCGCTTCCTCTTCCTTGCATACAACCTCCTCCACCACCCCCACCAAATATTCAATATTCAGAACCACCACCCCCTCCCTCGCCAAAAACGTCTTCTCCAATTCACTATTATTCCCCTCCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCCGTCAGTCTTTACCCGCCGCCATCTCCAACGCCCCCACCTCCGGTGGTTTACGAAAGCCCCCCACCGCCAGTCGTCTACCAAAGCCCGCCGCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCACCACCACCCTTCTATTAA 2412 55.14 MNPKSHFSLLLLFLRLSTALSTVGHGSLSDAEALFIRHRQLLYYRDEFGDRGEQITVDPSLVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCSYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLVSLEQLNVANNFLSGKIPESICELPKLQNFTFSNNFFSGEPPACLRVPDFSDRRNCLAGRPVQRPTGQCRAFSSRAVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPAGAVSPPSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPSSPSTPSSPSSPSTPSQPSTPSSPSSPSTPSTPSTPSTPPHFPSPSAPSPSSPPQGHAPPSLPSPSSPPQGHTPPALPPPSEPSPSSPPHGHTPPGPPSSEPSPPSPPQGHTPPAPPSPSEPSPSSPPQGHTPAIPPSPSEPSPSSPPQGHVPPSEPSPPGTVSPPAPPFPVYTPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNTPPPPSQPLPVYSPPPPVHTSPSPLPLPCIQPPPPPPPNIQYSEPPPPPSPKTSSPIHYYSPPPPVHYQAPPSPSPPVSLYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18515443 18517854 + Lsi06G008900.1 Lsi06g00890 665620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00890 803 MobiDBLite consensus disorder prediction 391 782 - -
Lsi06g00890 803 SUPERFAMILY L domain-like 80 350 - -
Lsi06g00890 803 MobiDBLite consensus disorder prediction 401 782 - -
Lsi06g00890 803 Pfam Leucine rich repeat N-terminal domain 74 106 IPR013210 -
Lsi06g00890 803 Pfam Leucine rich repeat 283 340 IPR001611 GO:0005515
Lsi06g00890 803 Gene3D Ribonuclease Inhibitor 71 234 IPR032675 -
Lsi06g00890 803 Gene3D Ribonuclease Inhibitor 235 374 IPR032675 -
Lsi06g00890 803 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 5 10 442 - -
Lsi06g00890 803 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 442 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00890 Lsi11g00270 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00890 Lsi-Chr6:18515443 Lsi09g01584 Lsi-Chr9:23970908 1.67E-147 dispersed
Lsi06g00890 Lsi-Chr6:18515443 Lsi06g00231 Lsi-Chr6:2653715 2.44E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00890 - - csv:101220934 741.88