Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00909 ATGGCTGCAGTTTTTTATTTTACGACCCGTCTCCCATTTTTCCTAATTTCATTTCCCCTGCTTCTTCTTCTTCTTTTTCATTCTGTCCAATCTGAGCCCACCGCCGACAAGGCAGCTCTTCTTGATTTCTTGAACAAAACGCCCCATGCGAGTCGCCTTCAATGGAATGCTTCTGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGTGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCCGGCGTTGGCCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGGGTTGCCGGCGGATTTTTCCAATTTGGGATTTCTTCGTAGTCTTTATCTCCAGGACAACGAGCTTTCCGGCGATTTTCCGGTGAGTGTGACTCAGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCGGGTTCTCTGCCGAGTATTCCGGTGGCTGCGACTAGTCTAACGGGATTCAATGTGTCGAATAATAAGCTCAATGGATCCATTCCCGAAACCCTTTCGAAATTCTCTGCTTCATCTTTCGCCGGGAATTTAGCGCTCTGCGGCGGTCCATTGCCGTCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACCTCTGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCTGCTTTCGTTGCGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTCCGGAAGCGCGAGCGGAGGCAGCCGGCGAAGCCGCCGAGTACGGTGATTACTGCTCGATCTGTTCCGGCTGAGGCAGGTACTTCGTCTTCGAAAGACGACATCACTGGTGGATCGGTGGAGACGGAGAAAAACAGATTAGTGTTCTTTGAAGGTGGGGTTTACAGCTTTGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTAGGAAAAGGAAGCGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTGGTGAAGAGATTGAAAGATGTGGTAATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCGTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCTGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGACTGGGACAACCGGATGAAAATCGCATTAAGCGCAGCGAGAGGATTGGCTCACCTCCACGTGTCGGGAAAACTCGTCCACGGCAACATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCCTCAACGCCGCCCAACCGGATCGCCGGCTATCGCGCGCCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGCTGTTGGAGCTTCTCACCGGAAAATCACCAAATCAAGCATCGTTGGGCGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCCGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGACGGCTTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACAGCCAGACGCCGCCGCAAGAGTCCAGAACCACCCCTCCCGGAGCTGGCGGTCCACCGTAG 1995 52.68 MAAVFYFTTRLPFFLISFPLLLLLLFHSVQSEPTADKAALLDFLNKTPHASRLQWNASASACTWVGVVCDVTQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGGLPADFSNLGFLRSLYLQDNELSGDFPVSVTQLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPVAATSLTGFNVSNNKLNGSIPETLSKFSASSFAGNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFVAFILLFLLLFCLRKRERRQPAKPPSTVITARSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRQSSDDPSKGSDSQTPPQESRTTPPGAGGPP 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18797364 18800895 + Lsi06G009090.1 Lsi06g00909 665639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00909 664 Gene3D Transferase(Phosphotransferase) domain 1 431 643 - -
Lsi06g00909 664 MobiDBLite consensus disorder prediction 625 664 - -
Lsi06g00909 664 SUPERFAMILY Protein kinase-like (PK-like) 360 621 IPR011009 -
Lsi06g00909 664 ProSiteProfiles Protein kinase domain profile. 356 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00909 664 MobiDBLite consensus disorder prediction 302 329 - -
Lsi06g00909 664 PANTHER OS05G0480400 PROTEIN 17 644 - -
Lsi06g00909 664 MobiDBLite consensus disorder prediction 639 655 - -
Lsi06g00909 664 Gene3D Ribonuclease Inhibitor 191 240 IPR032675 -
Lsi06g00909 664 Gene3D Ribonuclease Inhibitor 34 190 IPR032675 -
Lsi06g00909 664 Pfam Protein kinase domain 359 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00909 664 PANTHER OS05G0588300 PROTEIN 17 644 - -
Lsi06g00909 664 MobiDBLite consensus disorder prediction 313 328 - -
Lsi06g00909 664 SUPERFAMILY L domain-like 44 218 - -
Lsi06g00909 664 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Lsi06g00909 664 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Lsi06g00909 664 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00909 Lsi11g00286 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00237 Lsi-Chr4:2405835 Lsi06g00909 Lsi-Chr6:18797364 1.02E-165 dispersed
Lsi04g01054 Lsi-Chr4:12428994 Lsi06g00909 Lsi-Chr6:18797364 1.02E-07 dispersed
Lsi06g00909 Lsi-Chr6:18797364 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi09g00907 Lsi-Chr9:11033095 Lsi06g00909 Lsi-Chr6:18797364 3.18E-160 dispersed
Lsi11g00148 Lsi-Chr11:1652207 Lsi06g00909 Lsi-Chr6:18797364 2.14E-102 dispersed
Lsi02g00246 Lsi-Chr2:2085090 Lsi06g00909 Lsi-Chr6:18797364 0 transposed
Lsi02g01548 Lsi-Chr2:21338438 Lsi06g00909 Lsi-Chr6:18797364 1.36E-94 transposed
Lsi03g01949 Lsi-Chr3:30886044 Lsi06g00909 Lsi-Chr6:18797364 5.80E-150 transposed
Lsi05g00350 Lsi-Chr5:4467542 Lsi06g00909 Lsi-Chr6:18797364 0 transposed
Lsi11g00286 Lsi-Chr11:2954323 Lsi06g00909 Lsi-Chr6:18797364 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83723 PF00069 Pkinase 5.80E-37 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00909 - - cmo:103501524 1136.71