Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00914 ATGGGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACGTTGGCTAGCATGCACCAGTTGCGAGAATTACTCACTGGCAAACAAGTAAATAATCCTCAAGAAGCTTTGACCATTATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTACTCTCCTTATATTAAGAAGCCTCAGAATGTTGGGGGTGGTTTGCAAGCATGGCGTGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCGTCCACTGCATTCATTGAAGCAATCCCTGTCATTGACTTTGTCGCTCAACTTTTAAACAAAGATGTGTACTCGAGAACATTGTCTGATGCTGATCGTATTAAGGTTATAATATCAGAGTTTGAAAGATCCTGCACTGAACAAGTATGGATGCCTTTTTGCAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACAGAGGAAATGTACGAAGGAAATATCGAATTTCTGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCCATGGAGGTCAGTCCCGCCAACTATACCCCTCGATGCCTTCTACTACATTTGAATCTTTTGTCTGCAGAAAATTTACGTGACATTTTTCCCCAGGCATGTAAGATACTCAAAGGACAGAGATATACAAAAGGACTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCGTGCCAAAGACCCTCTGATCAGGAAATGGACATTTTACAGGTCCAATACATAATTTTTTTTCCTCTCAATTTGCTAATTACCATTGTCTTGGACCATGCAAAGACATTAACTGTGTAA 984 39.53 MGEREFKVQIKFVTLASMHQLRELLTGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPYIKKPQNVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQLLNKDVYSRTLSDADRIKVIISEFERSCTEQVWMPFCKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEVSPANYTPRCLLLHLNLLSAENLRDIFPQACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQVQYIIFFPLNLLITIVLDHAKTLTV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18867150 18868494 + Lsi06G009140.1 Lsi06g00914 665644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00914 327 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 133 - -
Lsi06g00914 327 SUPERFAMILY PAZ domain 100 303 IPR036085 GO:0005515
Lsi06g00914 327 CDD PAZ_argonaute_like 105 235 - -
Lsi06g00914 327 SMART PAZ_2_a_3 129 254 IPR003100 GO:0005515
Lsi06g00914 327 PANTHER PROTEIN ARGONAUTE 10 263 304 - -
Lsi06g00914 327 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 151 236 - -
Lsi06g00914 327 SMART DUF1785_2 53 105 IPR014811 -
Lsi06g00914 327 PANTHER PROTEIN ARGONAUTE 10 3 133 - -
Lsi06g00914 327 ProSiteProfiles PAZ domain profile. 152 235 IPR003100 GO:0005515
Lsi06g00914 327 PANTHER PROTEIN ARGONAUTE 10 151 236 - -
Lsi06g00914 327 Pfam PAZ domain 150 236 IPR003100 GO:0005515
Lsi06g00914 327 Gene3D paz domain 99 237 - -
Lsi06g00914 327 Pfam Argonaute linker 1 domain 54 104 IPR014811 -
Lsi06g00914 327 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 263 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00914 Lsi-Chr6:18867150 Lsi11g01668 Lsi-Chr11:24932736 2.19E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00914 K11593 - csv:101213206 463.766