Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00915 ATGGTTACTGTTCATGAGAATGCATATGAAGCAGATCCATACGCGAAAGAATTTGGAATTAGTATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGTATAAATTTCTCACGCAGCGTCCAAGAGAGCATAGCTTGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCAGTTTATAACAAACATGAAGGAAAAGAGTTAGATTTGCTGATAGCTATTCTTCCCGACAACAACGGCTCATTATATGTTTTCACTCTGCGTCGTGTATGCCTCCTTAGCGCCAATAACTTTGAAAGAATAGATCATCTAATCCAGGGCCAAAATCTATTAGTGATTTCAAGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCATGTCTTCAAGAAAAGCAGACAGTACTTGGCGAACGTGTCACTGAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACCATAATCTTTGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCCCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGTGTAACGTTAGATGCTTATAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCATGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCCACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCCGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCCCGTTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCAGCATACAGAGCTCGATTCTACGTAGAACCCGACGGACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGGTCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGTTAA 1620 43.15 MVTVHENAYEADPYAKEFGISIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRSVQESIACGFCQQLVQMCQISGMEFNPDPAIPIYSARPEQVKKALKFVYGAVYNKHEGKELDLLIAILPDNNGSLYVFTLRRVCLLSANNFERIDHLIQGQNLLVISSDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYSVTLDAYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDGQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18868531 18871845 + Lsi06G009150.1 Lsi06g00915 665645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00915 539 CDD Piwi_ago-like 13 500 IPR045246 -
Lsi06g00915 539 Gene3D - 33 237 - -
Lsi06g00915 539 PANTHER - 5 164 - -
Lsi06g00915 539 SMART Piwi_a_2 181 502 IPR003165 GO:0003676
Lsi06g00915 539 ProSiteProfiles Piwi domain profile. 189 502 IPR003165 GO:0003676
Lsi06g00915 539 Pfam Piwi domain 188 500 IPR003165 GO:0003676
Lsi06g00915 539 PANTHER - 185 538 - -
Lsi06g00915 539 Pfam Mid domain of argonaute 52 128 IPR032473 -
Lsi06g00915 539 Pfam Argonaute linker 2 domain 4 41 IPR032472 -
Lsi06g00915 539 Gene3D - 243 539 IPR036397 GO:0003676
Lsi06g00915 539 SUPERFAMILY Ribonuclease H-like 136 503 IPR012337 -
Lsi06g00915 539 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 185 538 - -
Lsi06g00915 539 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 5 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01645 Lsi-Chr5:24088056 Lsi06g00915 Lsi-Chr6:18868531 0 dispersed
Lsi06g00915 Lsi-Chr6:18868531 Lsi11g01668 Lsi-Chr11:24932736 2.04E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00915 K11593 - csv:101213206 971.459