Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g00932 | ATGGGGGAAGTACAATTGGAATCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAAGATACTGAAGCTGGTTCAATTCCTTGTTGTCGTATTTGTTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCTTCTTCTATGCCGTTCCTGCTTATGTCTATGAAGGATTTGCTTGTTTCCTATTCTATTGTCTTATAGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAATTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATTATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATTGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTACATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAGGCCTGTTTTGCACTCGTTATCGTTTTTGTTGTAATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCTACTATGGCCATTCAAAGGATCTGGCAAAGGCATTACCACATTCTTACCAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACACCTCCAAAATTGGAACCAGAACATGAACAGCACTTGAAAATGCTACAACTTCTGTAA | 975 | 41.23 | MGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSFFYAVPAYVYEGFACFLFYCLIEGFAFSHCTTCKAQFHLKISLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 19176905 | 19180277 | + | Lsi06G009320.1 | Lsi06g00932 | 665662 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g00932 | 324 | Pfam | RING-variant domain | 49 | 85 | IPR011016 | GO:0008270 | |
| Lsi06g00932 | 324 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Lsi06g00932 | 324 | CDD | RING_CH-C4HC3_MARCH | 49 | 87 | - | - | |
| Lsi06g00932 | 324 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 41 | 126 | IPR011016 | GO:0008270 | |
| Lsi06g00932 | 324 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 324 | - | - | |
| Lsi06g00932 | 324 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Lsi06g00932 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 133 | IPR013083 | - | |
| Lsi06g00932 | 324 | SMART | ringv_2 | 48 | 120 | IPR011016 | GO:0008270 | |
| Lsi06g00932 | 324 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 324 | - | - | |
| Lsi06g00932 | 324 | SUPERFAMILY | RING/U-box | 47 | 123 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g00729 | Lsi-Chr1:5760844 | Lsi06g00932 | Lsi-Chr6:19176905 | 6.09E-51 | dispersed | |
| Lsi06g00932 | Lsi-Chr6:19176905 | Lsi07g00675 | Lsi-Chr7:7231389 | 3.10E-30 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g00932 | - | - | csv:101220313 | 603.208 |