Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00932 ATGGGGGAAGTACAATTGGAATCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAAGATACTGAAGCTGGTTCAATTCCTTGTTGTCGTATTTGTTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCTTCTTCTATGCCGTTCCTGCTTATGTCTATGAAGGATTTGCTTGTTTCCTATTCTATTGTCTTATAGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAATTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATTATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATTGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTACATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAGGCCTGTTTTGCACTCGTTATCGTTTTTGTTGTAATCTTTGTAATCCTTGGCATAGCTTATGGTTTCCTTGCTGCTACTATGGCCATTCAAAGGATCTGGCAAAGGCATTACCACATTCTTACCAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACACCTCCAAAATTGGAACCAGAACATGAACAGCACTTGAAAATGCTACAACTTCTGTAA 975 41.23 MGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSFFYAVPAYVYEGFACFLFYCLIEGFAFSHCTTCKAQFHLKISLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL 324
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 19176905 19180277 + Lsi06G009320.1 Lsi06g00932 665662
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00932 324 Pfam RING-variant domain 49 85 IPR011016 GO:0008270
Lsi06g00932 324 MobiDBLite consensus disorder prediction 1 30 - -
Lsi06g00932 324 CDD RING_CH-C4HC3_MARCH 49 87 - -
Lsi06g00932 324 ProSiteProfiles Zinc finger RING-CH-type profile. 41 126 IPR011016 GO:0008270
Lsi06g00932 324 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 324 - -
Lsi06g00932 324 MobiDBLite consensus disorder prediction 1 41 - -
Lsi06g00932 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 133 IPR013083 -
Lsi06g00932 324 SMART ringv_2 48 120 IPR011016 GO:0008270
Lsi06g00932 324 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 324 - -
Lsi06g00932 324 SUPERFAMILY RING/U-box 47 123 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00729 Lsi-Chr1:5760844 Lsi06g00932 Lsi-Chr6:19176905 6.09E-51 dispersed
Lsi06g00932 Lsi-Chr6:19176905 Lsi07g00675 Lsi-Chr7:7231389 3.10E-30 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00932 - - csv:101220313 603.208