Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00933 ATGGACACCATCAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAACAACTCTCCAGAGATGGCAGTCAGTATAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGTAATCGCAGAGTCAAGCTCCGGCGCTTTATTATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTATTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCACAATCACCACTCTCTGTTACAGACAATGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCTTACCTTGATAAAACCACCTATCTACTTATTGATGAACCCAAGAAGATTGCTCTGAAGTATGCAAGGACATGGCTAATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCGCCTCTCCGTTCTTATGGATTGTTCAACATGCTTCGTCTATGGCGTCTCCGTAGAGTCAGTGCTCTTTTCTCCAGATTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCCGCATGCTTCTATTATCTCCTTGCTGCTCGTTATCACGACCCGAAAAATACTTGGATTGGAGCATCTATGGAGAACTTTCTGGACCAAAGTTTGTGGATTAGATATGTCACTTCCATTTACTGGTCTATCACTACCCTAACAACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGGTTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACTAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTTGCTCACAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAGGAAACTCTTGATTCCTTGCCTAAAGCCATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTGCTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATCTGCTTGTTCTCAAGAATGGAGTTGAACAGGCAAGTCTGCTTACTGAAGCTCTTAGATTTTTTGAATATTGGCCTGTTGGAGAGGCTAAAACTGGTGATCTTTGTGGAGAGATTGGGGTGTTATGTTACAGACCACAACTATTTACTGTTCGTACAAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGGACGGCTTTTCTGAATATTGTTCAATCTAATGTCGGCGATGGGACCATAATTATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGATCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTTAGTCTTTGTTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAACGAATCAGACAATACGGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTTCTTCTACTACTGGACTATGGAGCTGATCCAAATATTAGAGATTCAGATGGGATTGTGCCATTATGGGAGGCGATACTAGGTGGCCACGAGGCAGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATCAGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAGAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGACGTTACGAGTGCCAGGAACAACGGAACGACAGCTTTACATGTTGCTGTTTGTGAAGACAACATTGATATTGTCAAGTTCCTTCTCAAACAAGGTGCTGATATTGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATTAAAAACCTCTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCGATTCCCATTCCGGAGAAGCAGACCGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCTCAACCTCAGGAAGCAAATGAGAGTTCATGGCCGGGTCAATCTCGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCAGTGGAGAGAACTCTGGAACAAACCCAGCAAGGGTGATAATCAGCTGTCCAGAAATCGGCGAAGTTGGCGGGAAGTTGGTGCTGCTTCCGGAAAGCTACAACGAGCTGCTCGAGATTGGTGTGAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTCATTAGGGATGGTGATCATCTTATTTTTGTCAGTGATGGAAGAACCACATAA 2670 43.3 MDTIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLIDEPKKIALKYARTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLLAARYHDPKNTWIGASMENFLDQSLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQASLLTEALRFFEYWPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNIRDSDGIVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIDIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTTKESKTQSVLAIPIPEKQTGIRFLGRFTSEPMIRPQPQEANESSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTSGENSGTNPARVIISCPEIGEVGGKLVLLPESYNELLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTT 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19182245 19187859 - Lsi06G009330.1 Lsi06g00933 665663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lsi06g00933 889 SMART ANK_2a 607 636 IPR002110 GO:0005515
Lsi06g00933 889 SMART ANK_2a 638 667 IPR002110 GO:0005515
Lsi06g00933 889 SMART ANK_2a 671 700 IPR002110 GO:0005515
Lsi06g00933 889 SMART ANK_2a 574 603 IPR002110 GO:0005515
Lsi06g00933 889 SMART ANK_2a 541 570 IPR002110 GO:0005515
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat profile. 671 703 IPR002110 GO:0005515
Lsi06g00933 889 Pfam KHA, dimerisation domain of potassium ion channel 820 882 IPR021789 -
Lsi06g00933 889 CDD CAP_ED 380 499 IPR000595 -
Lsi06g00933 889 SUPERFAMILY Ankyrin repeat 545 725 IPR036770 -
Lsi06g00933 889 ProSiteProfiles cAMP/cGMP binding motif profile. 380 496 IPR000595 -
Lsi06g00933 889 Pfam Ankyrin repeats (3 copies) 546 635 IPR002110 GO:0005515
Lsi06g00933 889 Pfam Ankyrin repeats (3 copies) 645 701 IPR002110 GO:0005515
Lsi06g00933 889 Pfam Cyclic nucleotide-binding domain 400 499 IPR000595 -
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat profile. 574 606 IPR002110 GO:0005515
Lsi06g00933 889 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Lsi06g00933 889 SUPERFAMILY cAMP-binding domain-like 305 514 IPR018490 -
Lsi06g00933 889 MobiDBLite consensus disorder prediction 760 780 - -
Lsi06g00933 889 PANTHER POTASSIUM CHANNEL AKT1 6 888 IPR045319 GO:0005249|GO:0006813
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat region circular profile. 607 638 - -
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat region circular profile. 574 605 - -
Lsi06g00933 889 Gene3D - 542 726 IPR036770 -
Lsi06g00933 889 MobiDBLite consensus disorder prediction 759 780 - -
Lsi06g00933 889 ProSiteProfiles KHA domain profile. 820 889 IPR021789 -
Lsi06g00933 889 PANTHER K+ TRANSPORTER 1-RELATED 6 888 - -
Lsi06g00933 889 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lsi06g00933 889 Gene3D Jelly Rolls 345 520 IPR014710 -
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Lsi06g00933 889 Gene3D - 64 301 - -
Lsi06g00933 889 SMART cnmp_10 380 511 IPR000595 -
Lsi06g00933 889 PRINTS Ankyrin repeat signature 575 590 IPR002110 GO:0005515
Lsi06g00933 889 PRINTS Ankyrin repeat signature 687 701 IPR002110 GO:0005515
Lsi06g00933 889 ProSiteProfiles Ankyrin repeat region circular profile. 671 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00870 Lsi-Chr2:8175811 Lsi06g00933 Lsi-Chr6:19182245 1.50E-08 dispersed
Lsi03g01531 Lsi-Chr3:26310811 Lsi06g00933 Lsi-Chr6:19182245 2.20E-11 dispersed
Lsi03g01987 Lsi-Chr3:31245743 Lsi06g00933 Lsi-Chr6:19182245 2.77E-12 dispersed
Lsi04g02148 Lsi-Chr4:28580866 Lsi06g00933 Lsi-Chr6:19182245 0 dispersed
Lsi04g02170 Lsi-Chr4:28747420 Lsi06g00933 Lsi-Chr6:19182245 7.64E-10 dispersed
Lsi05g00173 Lsi-Chr5:2444454 Lsi06g00933 Lsi-Chr6:19182245 2.35E-154 dispersed
Lsi06g00933 Lsi-Chr6:19182245 Lsi09g00948 Lsi-Chr9:12206872 1.47E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00933 K21867 - csv:101220784 1675.6