Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00938 ATGAAGATTGAATCAATATTGATGAAGGTGCCACCGGTATGGGCGGCGGCGGTGACGGCGGCGGTGGTGATAATTTTAAGTGCAAAAATGGCTTTAATTTTATGGTGGAATCCACGAAGAATAGAAAAGCATTTTCATAGACAAGGAATTCGAGGCCCTCCTTATCGTTTCTTCATTGGTAATTTTAAAGAACTTGTTTCTATGATGCTTGCTGCTTCTTCTCATCCAATGCCCAATTTCTCTCATAATATTCTCCCTCGTGTCCTCTCTTTTTACCATCATTGGAAGAAAATTTACGGCTCGACTTTTTTAATTTGGTTCGGACCCATTGTTCGAGTCGCCGTTTCCGACCCGGACATGATCCGAGAAATCTTCACCACTAATTCTCACTTCTACGAGAAGAATGAAGCTCATCCTCTTGTCAAACAGCTCGAAGGCGATGGCCTCCTCACTCTCAAAGGCCAAAAATGGGCTCTCCATCGTAAAATCATCTCCCCCACTTTCCATATGAATAATCTCAAATTGTTGATTCCGTTGGTGGAGGAAAGTGTGGTGGAAATGGTGGAGAAATGGTCGTCTATGGCGGAGAGTGTCGATTCCGGGGAAATCGAGATCGATGTTTTCGAGTGCTTTCAAACCCTAACGGAAGATGTTATTACAAAAACAGCATTTGGTAGTAGCTACGAAGATGGTAAAGCTATATTTAAGCTTCAAACTCAACAAATGATATTAGCTTCTCAAGCTTTTCAAAAGGTCTTCATTCCTGGCTATAGATTTCTACCGACAAGAACGAATATAAATTCGTGGAAATTAGACAAGCAAATAAGGAAATCATTGATGAAATTAATCGAGAGTCGAAAAGGGAATTCAGAAAAAATTTGGGCAATGGATGAAAAAAAGCCAAAAGATTTGTTAGGGCTGATGATTCAAGCTTCCTCCTTAAAAAATAATAATTCCATTACTGTCCATGACATCGTTGAAGAATGCAAAAGCTTCTTCTTTGCTGGCAAACAAACCACTTCCAATCTGCTGACGTGGACTACTGTCTTGCTGGCAATGCATCCTCAGTGGCAAATTCAGGCACGTGATGAGGTCTTTAACGTCTGCGGTTCACGTGCCCTCCCTTCCAAAGATGATGTCTCCAACTTCAAAATCCTGAGCATGATACTAAATGAATCCTTACGGTTATACCCACCCACGGTGGCAACAATCCGACGTGCAAAGGCTGACGTGGAGCTAGGTGGACGAATGATCCCACGTGGAACGGAGTTTTTAATTCCAATCCTAGCCGTTCATCATGATCAAAGTATTTGGGGCAACGATGCGAGCGAGTTCAACCCAGGGCGGTTCTCAGAAGGAGTGGGGCGAGCCGGAAATCACCCAGCCGGGTTTATTCCATTTGGACTTGGAGTACGTACTTGCATTGGCCAAAATCTGGCAGTTTTGGAAGCAAAATTAACAATGGCAATTATACTTCAACGGTTCACGTTTCGTTTGGCTCCCACTTATCAACATGCACCAACGGTCCTGATGCTTCTTTATCCACAATATGGGGCCCCCGTTCTTTTTCAAAAGATACCCTTAAATTAA 1590 42.89 MKIESILMKVPPVWAAAVTAAVVIILSAKMALILWWNPRRIEKHFHRQGIRGPPYRFFIGNFKELVSMMLAASSHPMPNFSHNILPRVLSFYHHWKKIYGSTFLIWFGPIVRVAVSDPDMIREIFTTNSHFYEKNEAHPLVKQLEGDGLLTLKGQKWALHRKIISPTFHMNNLKLLIPLVEESVVEMVEKWSSMAESVDSGEIEIDVFECFQTLTEDVITKTAFGSSYEDGKAIFKLQTQQMILASQAFQKVFIPGYRFLPTRTNINSWKLDKQIRKSLMKLIESRKGNSEKIWAMDEKKPKDLLGLMIQASSLKNNNSITVHDIVEECKSFFFAGKQTTSNLLTWTTVLLAMHPQWQIQARDEVFNVCGSRALPSKDDVSNFKILSMILNESLRLYPPTVATIRRAKADVELGGRMIPRGTEFLIPILAVHHDQSIWGNDASEFNPGRFSEGVGRAGNHPAGFIPFGLGVRTCIGQNLAVLEAKLTMAIILQRFTFRLAPTYQHAPTVLMLLYPQYGAPVLFQKIPLN 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19296181 19298429 + Lsi06G009380.1 Lsi06g00938 665668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00938 529 SUPERFAMILY Cytochrome P450 49 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PANTHER CYTOCHROMEA2 13 521 - -
Lsi06g00938 529 Pfam Cytochrome P450 89 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 Gene3D Cytochrome P450 34 525 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Lsi06g00938 529 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS P450 superfamily signature 335 352 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS P450 superfamily signature 388 399 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 214 232 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 344 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 96 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PRINTS E-class P450 group I signature 324 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi06g00938 529 PANTHER CYTOCHROME P450 FAMILY MEMBER 13 521 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00938 Lsi11g00296 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01647 Lsi-Chr4:23946285 Lsi06g00938 Lsi-Chr6:19296181 1.93E-128 dispersed
Lsi06g00316 Lsi-Chr6:3599628 Lsi06g00938 Lsi-Chr6:19296181 1.70E-124 transposed
Lsi11g00296 Lsi-Chr11:3063954 Lsi06g00938 Lsi-Chr6:19296181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00938 K15639 - csv:101213466 943.725