Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00941 ATGGAGGATAAGAAAGCCAACATAATTGCTCTTTCCTTAATCCTCTTCCTCATCCTTCTCCTCATTCTTGCTCGAATTTTCCTGAAATTTTCCAAGCCTTTTTTCCTTATTTGCGGGATTGATGTATCCCTCACCGCCGCTATCTTGGTTTATATGGTGATCAGACTACGATACAACCGGAGAAGAAAACAGCTCGAGTCTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTATAGTTTCTTAAGAAAGGTCGCCGGAGTTCCGACGAAGTTCCGGTACAAAGAGCTCGAGGAAGCGACCGACTATTTCAGAGCGTTGATAGGACAAGGATCTTCCGGTTCCGTTTTCAAAGGAATCCTCAAAGACGGCACTGCAGTAGCCGTCAAGCGGATCGAGGGCGAGAATCGAGGAGACAAAGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAGCATATTAATCTCGTTCGTCTAATTGGTTACTGTACTAATTCATCTGGACCTCGATTTCTCGTCTATGAATTTGTACCGAACGGATCCTTGGATTGCTGGATTTTCCCCAAAAAACCTAAGCACAAGAATCGTAATCGTCCTGGCGGTTGCTTAGCTTGGGATCTGAGATATGGAGTCGCCATTGATGTTGCTAAAGCCCTAGCCTACCTTCACCATGATTGCCGATCGAGAATCTTACATCTCGATGTGAAGCCGGAAAACATCCTTCTCGATGAAAATTACAAAGCAATCGTATCGGATTTCGGATTGTCGAAGCTGATGGGGAAAGATGAGAGCCGAATAATGATATCGATGAGAGGGACGAAGGGGTATTTGGCTCCGGAATGGCTATTGGAGAACGGAATTTCAGAGAAATCGGACGTATACAGCTACGGAATGGTTCTTCTGGAACTAGTTGGAGGTCAGAGGAATGTGAGCGTAGTTGAAAATGGAGAGGACAGATCTAAGAGGAAATGGCAGTATTTTCCTCGAATCGTGAGTGCGAAGATGAAGGAAGGGGAATTAATGGAAGCTGTGGATAAAAGGCTCTTGGAAACGGGAACGATTGACGAGAGAGAGGTACGGAAACTGGTTTGTGTGGGTTTGTGGTGTATACAAGAGAAGGCGAAGCTGAGGCCGACGATGGCGACGGTGGTGGATATGCTTGAAGGCCGCGTCGCGGTGGAGGAGCCGCCGGATACTGAAATGCTCGTCGTTGATTTGTTGTCTATTGATGAAGAGATGATGAATAACCGTGAGAAGCCGAAGATTGTTCCATTTGGGGAAAGGATGAACGACAGAAACCTTCCTTCGTCTTCGTCGACGACGTGTTCGTACGCCTTCTCGGTACTCTCCGCCCGGTGA 1365 47.18 MEDKKANIIALSLILFLILLLILARIFLKFSKPFFLICGIDVSLTAAILVYMVIRLRYNRRRKQLESQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGQGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHINLVRLIGYCTNSSGPRFLVYEFVPNGSLDCWIFPKKPKHKNRNRPGGCLAWDLRYGVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYKAIVSDFGLSKLMGKDESRIMISMRGTKGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEDRSKRKWQYFPRIVSAKMKEGELMEAVDKRLLETGTIDEREVRKLVCVGLWCIQEKAKLRPTMATVVDMLEGRVAVEEPPDTEMLVVDLLSIDEEMMNNREKPKIVPFGERMNDRNLPSSSSTTCSYAFSVLSAR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19329829 19331193 + Lsi06G009410.1 Lsi06g00941 665671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00941 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 454 - -
Lsi06g00941 454 PANTHER RECEPTOR-LIKE KINASE 1 454 - -
Lsi06g00941 454 ProSiteProfiles Protein kinase domain profile. 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00941 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Lsi06g00941 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00941 454 Gene3D Transferase(Phosphotransferase) domain 1 179 403 - -
Lsi06g00941 454 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Lsi06g00941 454 SMART serkin_6 103 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00941 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Lsi06g00941 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00941 Lsi-Chr6:19329829 Lsi04g02129 Lsi-Chr4:28415176 1.55E-98 dispersed
Lsi06g00941 Lsi-Chr6:19329829 Lsi08g01207 Lsi-Chr8:20602006 1.41E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83724 PF00069 Pkinase 2.10E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00941 - - csv:101211041 807.749