Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00967 ATGGGAAAAACAAAAGGCATTTGGTGGATTTTTGTTGCAATTCTTCTAGCAATGGGTTTGCCTGTAAAATCTCAGCTGAATGTTGGGTTTTATTCTAAGTCTTGTCCTAAAGCTGAGTTCATTGTTAGGTCTATTGTTGAGTCTTATTACAAGGCTGATCCTACCATTGCTGCTGGCTTGCTGAGGCTTCACTTTCATGATTGTTTTGTTGAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGGTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCTCAACTCGAAAGTTTGTGTCCTGGTGTTAGTGATGGTCCAAGTTGGTCTGTGCCCACGGGGAGAAGGGATGGGAGAGTTTCTATCAGTTCTCGAGCAGAAGATCTGCCTTCTCCATTCGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATCGGGCGAACGGATTGCCAACTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCATTCTTGACTGAACTGAGAAGTCTGTGCCCTTTGGATGGAGATCCATTCAGAGGAGTGGCCATGGACAAGGACAGCCAGTTGAGATTTGACAACAGCTTTTACAAGAACTTGATGGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACCAGAGACATTGTGAAGAGATATGGTGGCAATTTCAGAGGATTGTTGGGCCTCAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACACAAGGGGAGATTAGACAAGTGTGTTATCAGTTCAATAAGCAGAAGTGA 936 43.48 MGKTKGIWWIFVAILLAMGLPVKSQLNVGFYSKSCPKAEFIVRSIVESYYKADPTIAAGLLRLHFHDCFVEGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVSDGPSWSVPTGRRDGRVSISSRAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGRTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVAMDKDSQLRFDNSFYKNLMDGNGVLESDQRLWSHPSTRDIVKRYGGNFRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRQVCYQFNKQK 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19619446 19622656 - Lsi06G009670.1 Lsi06g00967 665697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00967 311 PRINTS Haem peroxidase superfamily signature 163 178 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Haem peroxidase superfamily signature 223 238 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Haem peroxidase superfamily signature 116 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 Pfam Peroxidase 116 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 Pfam Peroxidase 42 114 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Lsi06g00967 311 CDD secretory_peroxidase 25 304 IPR033905 GO:0004601|GO:0042744
Lsi06g00967 311 PANTHER PEROXIDASE 25-RELATED 11 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 ProSitePatterns Peroxidases proximal heme-ligand signature. 163 173 IPR019793 -
Lsi06g00967 311 PRINTS Plant peroxidase signature 221 236 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Plant peroxidase signature 237 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Plant peroxidase signature 282 295 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 SUPERFAMILY Heme-dependent peroxidases 25 308 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 ProSiteProfiles Plant heme peroxidase family profile. 25 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi06g00967 311 PANTHER PEROXIDASE 11 306 - -
Lsi06g00967 311 Gene3D - 29 308 - -
Lsi06g00967 311 Gene3D Peroxidase, domain 2 141 287 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00773 Lsi-Chr3:10988369 Lsi06g00967 Lsi-Chr6:19619446 1.78E-91 dispersed
Lsi03g00774 Lsi-Chr3:11036102 Lsi06g00967 Lsi-Chr6:19619446 6.79E-119 dispersed
Lsi03g00800 Lsi-Chr3:11811148 Lsi06g00967 Lsi-Chr6:19619446 5.46E-82 dispersed
Lsi06g00967 Lsi-Chr6:19619446 Lsi01g00995 Lsi-Chr1:8224675 2.66E-73 dispersed
Lsi06g00966 Lsi-Chr6:19613844 Lsi06g00967 Lsi-Chr6:19619446 4.87E-43 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00967 K00430 - csv:101214998 560.836