Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00969 ATGCCCAAGTTTAAGAAATTTAGAGGTGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGGAGGATTTGGCTCGGGACGTTTGAGACGGCGGAGGAAGCAGCGAAAGCGTACGATCAAGCTGCAGTTTTGATGAGCGGTCGGAACGCGAAAACCAATTTCCCTACTACTCCCAATGGAGACATCAACAACATTGTTACAACCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAAGCCAAGCTCAAGAAATGCTGTCGTACTCCGTCACCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAACCTCGGCGTGTGGCAGAAGCGTGCGGGGCAACGATCGGCATCCAACTGGGTTATGACCGTTGAGCTTGGAAACAAGAAGAGCCACAATAACACCAATAACGACAACGACAACGATAATGTAGATTCTCCTATGATGGCTGTGGTTGCTTCCGATCATCAGTCTCCGGTGGCGGAAGTGGCGGAGATTCCATCGGAGTTAGAAGAAGAAGAGAGAATGTTAGCATTGCAAATGGTGGAGGAACTGCTTCACATCAACTATGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 47.0 MPKFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPNGDINNIVTTKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNLGVWQKRAGQRSASNWVMTVELGNKKSHNNTNNDNDNDNVDSPMMAVVASDHQSPVAEVAEIPSELEEEERMLALQMVEELLHINYDPAEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19664746 19665782 - Lsi06G009690.1 Lsi06g00969 665699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00969 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 200 - -
Lsi06g00969 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lsi06g00969 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lsi06g00969 216 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Lsi06g00969 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 200 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00969 Lsi11g00320 CCT
Lsi06g00969 Lsi11g00320 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02675 Lsi-Chr2:33219838 Lsi06g00969 Lsi-Chr6:19664746 3.30E-34 dispersed
Lsi06g00969 Lsi-Chr6:19664746 Lsi08g01234 Lsi-Chr8:20802008 5.51E-31 dispersed
Lsi11g00320 Lsi-Chr11:3283759 Lsi06g00969 Lsi-Chr6:19664746 1.60E-77 wgd
Lsi04g02133 Lsi-Chr4:28467155 Lsi06g00969 Lsi-Chr6:19664746 1.11E-66 wgd
Lsi06g00969 Lsi-Chr6:19664746 Lsi07g00465 Lsi-Chr7:4943990 6.21E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25503 PF00847 AP2 7.20E-12 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00969 - - bhj:120071615 374.4