Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00977 ATGAAGCGACTAAATAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAACACAAAATGGTGGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTCTATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAATAGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGGCTGAGTGCAATGTCTCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGATTGTGCAGGATGTAAGGACATCCTTGCCCCAATGTATGTACTGTATATCGTTAAAATGCTCTTAAGTAGGTGGTTCCATTCTTTTGGTCTGATTCATTGGATTGAATATGTTCATGTTTATCTATCGTTCTGTTTCTTAAATCATTATGTGCTTGGAGGTCAGGGTTACGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTTCCCACCCTAAATATGAAGATTAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCAAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATTAGGAAAGATCCATGGTTCAGAAGAAACTACATCCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCAGGCTGTTTTTGATGACATTGAGGATGAATATGTAGCTGATCGGTCAGAAAAAAGTGACGAGGGTCCTTTAATAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCAGCAAACACGTTTTGTTTCTCGTAAACCTGCTAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCAATGGGTTTAAATGTCCACACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAGTTTGCTGCTGTGCTTGAGATTTATGAGGTGGCACCATCTCTTTTTATGGTGGACGTTCGCAAAGCTGCTGGAGACACTCTTGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACGTAATCTGGAAACCAACTGAGAATGTGGGGAACTGA 1464 41.46 MKRLNRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPEIESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSAMSQQGVELLHTTCGTPNYVAPEDCAGCKDILAPMYVLYIVKMLLSRWFHSFGLIHWIEYVHVYLSFCFLNHYVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVQAVFDDIEDEYVADRSEKSDEGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKQQTRFVSRKPANFIMSSIEAVAEAMGLNVHTRNFKTRLERRTGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENVIWKPTENVGN 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19746830 19752288 - Lsi06G009770.1 Lsi06g00977 665707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00977 487 Pfam NAF domain 357 416 IPR004041 GO:0007165
Lsi06g00977 487 Gene3D Kinase associated domain 1, KA1 354 480 - -
Lsi06g00977 487 ProSitePatterns Protein kinases ATP-binding region signature. 17 49 IPR017441 GO:0005524
Lsi06g00977 487 ProSiteProfiles Protein kinase domain profile. 11 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00977 487 ProSiteProfiles NAF domain profile. 355 379 IPR018451 GO:0007165
Lsi06g00977 487 SMART serkin_6 11 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00977 487 CDD CIPK_C 361 476 - -
Lsi06g00977 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lsi06g00977 487 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 228 483 - -
Lsi06g00977 487 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 6 179 - -
Lsi06g00977 487 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Lsi06g00977 487 SUPERFAMILY Protein kinase-like (PK-like) 8 332 IPR011009 -
Lsi06g00977 487 Pfam Protein kinase domain 230 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00977 487 Pfam Protein kinase domain 11 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00977 487 Gene3D Transferase(Phosphotransferase) domain 1 91 322 - -
Lsi06g00977 487 PANTHER - 228 483 - -
Lsi06g00977 487 PANTHER - 6 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00977 Lsi-Chr6:19746830 Lsi10g00943 Lsi-Chr10:13851414 5.75E-144 dispersed
Lsi06g00977 Lsi-Chr6:19746830 Lsi02g00916 Lsi-Chr2:8801729 1.68E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83725 PF00069 Pkinase 1.20E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00977 - - csv:101203676 815.068