Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g00996 ATGGAGAACAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGATTCTGCTACTGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGCTGAGCTAGCCCCTGATAATGCCAATCCATCACAATCAGATAACAAAACAACAAGCAAACTGCTTCAGTTCTCTTTTCATGAGCTCAAGGCAGCAACTGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCCGGATCAGGAATTACAGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTTGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCAACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATTAAGATTGCCCTTGGGGCAGCAAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCCGTTATCTATAGAGATTTTAAGACATCCAATATTTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTGATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGACATCTGACATCCAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATTGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTCGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTTGATCCTCGCTTGGACTTCAACTATTCCATTAAAGGGGTGCAGAAGGTCTCCCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCGAAACTACGTCCAACCATGGATGAAGTTGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATCCTAACGTCTCACTGCCGTTCATCTTCACAAGGGAGGCGCAAAAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAACAGCATGTAAGGTGA 1275 43.84 MENRCGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYDSATETRYLNASNRDLCTLNEAELAPDNANPSQSDNKTTSKLLQFSFHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDQRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLDFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19976771 19980924 - Lsi06G009960.1 Lsi06g00996 665726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g00996 424 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g00996 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 133 IPR017441 GO:0005524
Lsi06g00996 424 MobiDBLite consensus disorder prediction 407 424 - -
Lsi06g00996 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Lsi06g00996 424 Gene3D Phosphorylase Kinase; domain 1 69 180 - -
Lsi06g00996 424 CDD STKc_IRAK 101 377 - -
Lsi06g00996 424 SUPERFAMILY Protein kinase-like (PK-like) 77 385 IPR011009 -
Lsi06g00996 424 PANTHER OS01G0588500 PROTEIN 65 393 - -
Lsi06g00996 424 Pfam Protein tyrosine and serine/threonine kinase 99 374 IPR001245 GO:0004672|GO:0006468
Lsi06g00996 424 PANTHER OS01G0588500 PROTEIN-RELATED 65 393 - -
Lsi06g00996 424 Gene3D Transferase(Phosphotransferase) domain 1 181 391 - -
Lsi06g00996 424 MobiDBLite consensus disorder prediction 391 424 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g00996 Lsi11g00342 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01498 Lsi-Chr2:20821658 Lsi06g00996 Lsi-Chr6:19976771 2.79E-166 dispersed
Lsi04g00457 Lsi-Chr4:4337978 Lsi06g00996 Lsi-Chr6:19976771 7.62E-180 dispersed
Lsi06g00388 Lsi-Chr6:4273350 Lsi06g00996 Lsi-Chr6:19976771 4.97E-134 dispersed
Lsi06g00996 Lsi-Chr6:19976771 Lsi10g01383 Lsi-Chr10:17946063 1.00E-154 dispersed
Lsi11g00342 Lsi-Chr11:3563474 Lsi06g00996 Lsi-Chr6:19976771 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83727 PF00069 Pkinase 1.60E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g00996 - - bhj:120071895 847.81