Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01021 ATGGGCGTCACCATTCTTCCAGATCTCGGGGCTGAGATTTTCATTCCTGTTTGTGCTATTGTCGGAATCCTCTTCTCTTTAGTGCAGTGGTACTACGTTTCACAAGTTAAGCTTTCTCCTGGTCGAGATTCCGCTAATAACAACTCCGCTGCTGCTAAAAATGGCTATTCCGACTACCTTATTGAGGAGGAAGAAGGTGTCAACGACCATAACGTTGTTATTAAATGTGCCGAAATTCAGAACGCTATCTCTGAGGGGGCAACCTCCTTCCTTTTCACGGAGTACAAGTATGTTGGCATCTTTATGATATTGTTTGCAGTCTTGATTTTTGTATTCCTTGGGTCAGTGGAGGGTTTTAGTACCAAGCCCCAAGCGTGCTCATATGACAAAACAAAGACTTGTAAGCCAGCTTTGGCTACAGCTGCGTTCAGCACTATATCATTTGTACTTGGTGCAGTAACTTCAGTGGTTTCTGGTTTCCTTGGAATGAAAATTGCTACATATGCAAATGCCAGAACCACCTTGGAGGCAAGAAAAGGTGTTGGAAAGGCATTTATTACTGCGTTTAGGTCTGGTGCTGTCATGGGCTTCCTCCTAGCTGCCAATGGTCTCTTGGTTTTGTTTATTGCCATTAACCTCTTCAAATTGTACTATGGTGATGACTGGGGTGGCCTTTTTGAGTCTATCACTGGGTATGGTCTTGGTGGATCTTCCATGGCTCTATTTGGTAGAGTTGGTGGTGGTATCTACACTAAAGCTGCGGATGTTGGTGCCGACCTTGTGGGCAAGGTGGAAAGGAACATTCCTGAGGATGATCCAAGAAATCCAGCTGTGATTGCTGATAATGTGGGTGACAATGTTGGGGATATTGCCGGTATGGGATCAGATCTTTTTGGTTCATATGCTGAATCGTCTTGTGCTGCTCTTGTTGTTGCTTCTATCTCCTCTTTCGGCAACAACCATGAGTACACACCAATGCTCTATCCACTCATCATTAGTTCCATGGGTATCCTTGTTTGCCTGATCACCACTTTATTTGCAACTGATTTCTTTGAGATCAAGGCTGTTAAGGAAATTGAGCCAGCATTGAAGAAGCAACTCATAATTTCCACTGTTATAATGACTTTTGGAATTGCACTTGTTACTTGGCTGGCTGTTCCATCAACATTCACCATCTTCAATTTTGGAACTCAAAAAGTTGTACAGAACTGGGAACTTTTCTTGTGCGTTGCTGTTGGTCTTTGGGCTGGGCTTATAATAGGATTTGTGACAGAGTACTATACTAGCAATGCATACAGAAATGAACATCTGATCACGTATTTGGTCTGGTTCTTCAGCCCTGTGCAAGATGTTGCTGATTCTTGCCGAACTGGAGCCGCTACAAATGTTATTTTTGGCTTGGCCTTGGGATACAAATCTGTCATTATCCCTATTTTTGCAATTGCAGTTAGCATTTTTGTGAGTTTCTCCTTTGCTGCAATGTATGGCATTGCCGTTGCTGCCCTTGGAATGTTGAGCACAATTGCTACTGGTTTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGCATTGCGGAGATGGCTGGCATGAGCCACAGAATTCGTGAGAGAACCGATGCCCTTGATGCTGCTGGAAACACAACTGCAGCCATTGGAAAGGTATTTTTTTTTGGTTTATTCTTTTCGTTTAAAGCATACTGTCTGGATTGTCTCTTTATTGGCATTGGTCTTGGTCTTCTTAGTGTGTCCAGAAGGCAACAGTGTCCCAATATATTCGTTGTTAAGTCTTTCTTCCAAAGCCTTCCAATGATAATTGCAGGTTTTGCCATTGGTTCAGCTGCTCTTGTGTCCCTTGCCCTCTTCGGTGCCTTTGTTAGCCGTGCTGGTGTCCATGTTGTTGACGTCTTGACACCCAAAGTTTTCATTGGCTTGATCGTGGGTGCTATGCTGCCATACTGGTTTTCTGCCATGACAATGAAGAGTGTTGGGAGTGCAGCCCTGAAGATGGTTGAGGAGGTGCGAAGGCAATTCAACACCATCCCAGGTCTCATGGAGGGTACCGCCAAACCCGACTATGCTACATGTGTCAAGATTTCAACTGATGCTTCTATCAAGGAAATGATCCCACCTGGTGCCCTTGTCATGTTGACACCCCTAATTGTTGGTATCCTATTCGGAGTCGAAACACTTTCTGGCGTCCTGGCTGGATCCCTTGTTTCTGGTGTGCAGATTGCTATCTCTGCATCCAACACCGGAGGTGCCTGGGACAATGCTAAGAAATACATCGAGGCTGGTGCCTCTGAGCATGCTAGAACCCTTGGCCCGAAAGGATCAGATCCACACAAAGCCGCTGTTATCGGTGACACAATCGGAGACCCGCTAAAGGATACATCCGGACCTTCTCTCAACATTCTCATCAAGTTGATGGCTGTGGAGTCCCTTGTGTTTGCTCCTTTCTTTGCCAGCCACGGTGGTATTCTCTTCAAGATCTTCTAA 2505 45.11 MGVTILPDLGAEIFIPVCAIVGILFSLVQWYYVSQVKLSPGRDSANNNSAAAKNGYSDYLIEEEEGVNDHNVVIKCAEIQNAISEGATSFLFTEYKYVGIFMILFAVLIFVFLGSVEGFSTKPQACSYDKTKTCKPALATAAFSTISFVLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWGGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNNHEYTPMLYPLIISSMGILVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVIMTFGIALVTWLAVPSTFTIFNFGTQKVVQNWELFLCVAVGLWAGLIIGFVTEYYTSNAYRNEHLITYLVWFFSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKVFFFGLFFSFKAYCLDCLFIGIGLGLLSVSRRQQCPNIFVVKSFFQSLPMIIAGFAIGSAALVSLALFGAFVSRAGVHVVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFASHGGILFKIF 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20386431 20391666 + Lsi06G010210.1 Lsi06g01021 665751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01021 834 PIRSF H+-PPtase 12 568 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 PIRSF H+-PPtase 606 832 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 824 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 Pfam Inorganic H+ pyrophosphatase 610 819 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 Pfam Inorganic H+ pyrophosphatase 43 560 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 561 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 607 833 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 11 560 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lsi06g01021 834 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP 1 561 - -
Lsi06g01021 834 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP 607 833 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01021 Lsi-Chr6:20386431 Lsi11g00624 Lsi-Chr11:6632115 1.36E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01021 K23025 - csv:101222673 1395.95