Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01039 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTCGGTGATGATGGCGCCACTGATCATTTTCCTGTTGGGATGCGGGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTCCGTAAATGCCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAAATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTCATCCGGAGAAAGAAGCTTGAACCGAAGGTGAAAAACAAGTTCCCCAGTCAAGATAGGGTTCGAAATGGAGGCGATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATAGTGACGACCCTTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCTGTTGAGTTGCACCGGAAGTTTGTTTCAGCGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGGGAGTTGCATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCTTCTTATTCACCTGTTGGAATGCTCGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAACTTGAACTGCGCTATTAATAACCTTGGAAAGCTCCAACCAACTTCTATGTTGCCTCCAAACCAAACGACTAATCTGCTGCAAGGAATTCCTACATCACTCGAGATCAGCCAGTTGCAACACAGCAAGTCCGCCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCAGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCGAATATTGGAAATTCAACCTATTCGGTTTCTCCTGGCCCATTGATGTTACAAGGAACAATGCCAACATATGGAAATCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACATTTGTCTAGATTCTCAGCAACTTCTTTGACCTCCAATGAAGCTTATCCCAATGATCAATTGCATGCGATGAACGCGAGCATTTCTTCCGGCCCCTCAACGATTGGGAACATCTCGGTTGATTTTTCCTCTAGAAATGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGCAGGGGTAGTTGGCAGCGTTATTCAAGCTATGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGCAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCTAGCAATGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGATAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCCAAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAATTCGATGATTAAACGGGTATAG 1929 44.74 MTVEGHSVAAVGDDGATDHFPVGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKVKNKFPSQDRVRNGGDEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDSDDPSNQKKPRVVWSVELHRKFVSAKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTSMLPPNQTTNLLQGIPTSLEISQLQHSKSATPIGDFNTMNETSRFGVPNSFSDTRANIGNSTYSVSPGPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAHLSRFSATSLTSNEAYPNDQLHAMNASISSGPSTIGNISVDFSSRNAVSAPLLDSRDVQCQAGVVGSVIQAMNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGPNTKTNADGNYLLNQTKSHDGSIQGSFESLDDIMNSMIKRV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20575480 20579114 - Lsi06G010390.1 Lsi06g01039 665769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01039 642 Gene3D - 24 185 - -
Lsi06g01039 642 MobiDBLite consensus disorder prediction 150 210 - -
Lsi06g01039 642 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 228 641 IPR045279 GO:0009736
Lsi06g01039 642 SMART REC_2 24 136 IPR001789 GO:0000160
Lsi06g01039 642 PIRSF RR_ARR_type-B 228 641 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi06g01039 642 PIRSF RR_ARR_type-B 1 227 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi06g01039 642 SUPERFAMILY CheY-like 23 149 IPR011006 -
Lsi06g01039 642 CDD REC_typeB_ARR-like 26 140 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 227 - -
Lsi06g01039 642 MobiDBLite consensus disorder prediction 150 164 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 228 641 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 227 IPR045279 GO:0009736
Lsi06g01039 642 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01039 K14491 ARR-B; two-component response regulator ARR-B family - csv:101213687 1142.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01039 Lsi-Chr6:20575480 Lsi09g01466 Lsi-Chr9:22652653 1.48E-76 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi06g01039 Lsi-Chr6:20575480 1.02E-143 transposed
Lsi11g00368 Lsi-Chr11:3798647 Lsi06g01039 Lsi-Chr6:20575480 1.04E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g640 Blo01g00600 Blo16g00870 Bda01g01967 Bda11g00074 Bpe01g00636 Bpe02g02148 Bma07g00742 . Cmo10g00516 Cmo11g00476 . . . . Sed11g0169 Cpe04g01239 Cpe18g00551 Bhi02g00898 Tan09g1542 Cmetu02g1717 . . . . . . . . . . . Cone2ag0549 Cone16ag0459 Cone4ag0611 . Lsi06g01039 . . Cme02g01081 Blo08g00530 . Bda02g00326 Bda09g00841 Bpe08g00654 Bpe13g01134 Bma01g00295 Bma06g00994 . . . Cma10g00483 . Car10g00447 . . . . . . . . . . Cla06g01213 Cam06g1357 Cec06g1400 Cco06g1405 Clacu06g1305 Cmu06g1276 Cre06g2086 . Csa01g01861 Chy02g02099 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003972 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25506 PF00072 Response_reg 1.50E-25 CL0304 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01039 Lsi_Chr06 FPKM 37.524837 43.622627 36.465412 37.238628 29.770037 28.353449 25.953762 106.825836 104.736412 100.315926