Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01039 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTCGGTGATGATGGCGCCACTGATCATTTTCCTGTTGGGATGCGGGTTCTTGCTGTTGACGACGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTCCGTAAATGCCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAAATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTCATCCGGAGAAAGAAGCTTGAACCGAAGGTGAAAAACAAGTTCCCCAGTCAAGATAGGGTTCGAAATGGAGGCGATGAAGGCGAACAAGGTTTCTCACCAACCAATAATGCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATAGTGACGACCCTTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCTGTTGAGTTGCACCGGAAGTTTGTTTCAGCGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGGGAGTTGCATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCTTCTTATTCACCTGTTGGAATGCTCGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAACTTGAACTGCGCTATTAATAACCTTGGAAAGCTCCAACCAACTTCTATGTTGCCTCCAAACCAAACGACTAATCTGCTGCAAGGAATTCCTACATCACTCGAGATCAGCCAGTTGCAACACAGCAAGTCCGCCACTCCCATTGGAGACTTCAATACAATGAATGAGACATCCAGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCGAATATTGGAAATTCAACCTATTCGGTTTCTCCTGGCCCATTGATGTTACAAGGAACAATGCCAACATATGGAAATCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCAGCACATTTGTCTAGATTCTCAGCAACTTCTTTGACCTCCAATGAAGCTTATCCCAATGATCAATTGCATGCGATGAACGCGAGCATTTCTTCCGGCCCCTCAACGATTGGGAACATCTCGGTTGATTTTTCCTCTAGAAATGCAGTTTCAGCTCCCTTACTGGATTCAAGAGACGTGCAATGCCAGGCAGGGGTAGTTGGCAGCGTTATTCAAGCTATGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGCAACGTGCAGCATAATCTTGGTGCAATCAATTCTCTGGTTTCTAGCAATGGGACTCTAACCCCATTAAGCCAGAGTTACAATCAGAACGGTCTAGTATGTGATAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCCAAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAGTTTCGAGTCCTTGGATGATATAATGAATTCGATGATTAAACGGGTATAG 1929 44.74 MTVEGHSVAAVGDDGATDHFPVGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKVKNKFPSQDRVRNGGDEGEQGFSPTNNADNAKFNRKRKDQDDDEDEEGKENGLDSDDPSNQKKPRVVWSVELHRKFVSAKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTSMLPPNQTTNLLQGIPTSLEISQLQHSKSATPIGDFNTMNETSRFGVPNSFSDTRANIGNSTYSVSPGPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAHLSRFSATSLTSNEAYPNDQLHAMNASISSGPSTIGNISVDFSSRNAVSAPLLDSRDVQCQAGVVGSVIQAMNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQSYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGPNTKTNADGNYLLNQTKSHDGSIQGSFESLDDIMNSMIKRV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20575480 20579114 - Lsi06G010390.1 Lsi06g01039 665769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01039 642 Gene3D - 24 185 - -
Lsi06g01039 642 MobiDBLite consensus disorder prediction 150 210 - -
Lsi06g01039 642 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 228 641 IPR045279 GO:0009736
Lsi06g01039 642 SMART REC_2 24 136 IPR001789 GO:0000160
Lsi06g01039 642 PIRSF RR_ARR_type-B 228 641 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi06g01039 642 PIRSF RR_ARR_type-B 1 227 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi06g01039 642 SUPERFAMILY CheY-like 23 149 IPR011006 -
Lsi06g01039 642 CDD REC_typeB_ARR-like 26 140 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 227 - -
Lsi06g01039 642 MobiDBLite consensus disorder prediction 150 164 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 228 641 - -
Lsi06g01039 642 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 227 IPR045279 GO:0009736
Lsi06g01039 642 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01039 Lsi-Chr6:20575480 Lsi09g01466 Lsi-Chr9:22652653 1.48E-76 dispersed
Lsi04g02085 Lsi-Chr4:28044292 Lsi06g01039 Lsi-Chr6:20575480 1.02E-143 transposed
Lsi11g00368 Lsi-Chr11:3798647 Lsi06g01039 Lsi-Chr6:20575480 1.04E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25506 PF00072 Response_reg 1.50E-25 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01039 K14491 - csv:101213687 1142.1