Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01045 ATGGGTGACATTTCATTAGAAGATGTCAAGAATGAGAATATTGATCTAGAAAGAATTCCTGTTGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGACTACAGCAGAAGGAGAAAAAAGACTCCAAATTTTTGGCCCTAATAAGCTTGAAGAGAAAAAAGAGAGTAAACTTTTGACGTTTTTGGGGTTTATGTGGAACCCTCTTTCATGGGTCATGGAATCTGCGGCAATCATGGCCATTGTTTTGGCCAATGGAGGGGGGAAACCACCAGATTGGCAAGATTTTGTTGGTATCATTGTCTTATTGATCATCAACTCTACCATCAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTCATGGCTGGTCTTGCCCCTAAAACCAAGCAAGGTGAGATTGAGGCTGTTGTTATTGCCACTGGTGTGCATACTTTCTTTGGAAAGGCAGCTCACCTTGTGGATAGCACCAACCAAGTTGGTCATTTCCAAAAGATAATTGACCTATGTGAGCTTAAAGGAGAAATAAGAAAGAAAGCTCATGACATTATTGATAACTATGCCAATCGCGGTCTTCGTTCCTTGGCAGTTGGTCGACAGACTGTTAAAGATAAGGACAAAGAAAGTGCTGGAGAACCATGGGAATTTGTTGGTCTCTTGCCCCTATTTGATCCTCCAAGGCATGATAGTGCAGAAACCATTCGTCGAGCTCTTGAACTCGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCAATAGGAAAAGAAACTGGTCGAAGGCTCGGCATGGGCACCAACATGTATCCATCATCATCTTTGCTCGGCCAATGCAAAGATGAGTCAATTGCTTCCATTCCTGTTGATGAACTGATTGAGAAGGCTGATGGGTTTGCAGGAGTCTTCCCTGAACACAAGTATGAGATTGTCAAGAAACTTCAAGAGAGGAATCATATTTGTGGCATGACAGGAGATGGCGTCAATGATGCTCCTGCTCTCAAGAAGGCCGACATCGGAATTGCTGTGGCCGATGCAACCGATGCAGCAAGAAGTGCATCAGACATTGTCTTGACAGAGCCAGGGCTAAGTGTGATTGTGAGTGCTGTATTGACCAGTAGGGCCATCTTTCAGAGAATGAAGAACTATACTATCTATGCGGTTTCCATCACAATTCGTATTGTGTTGGGATTCATGCTTGTTGCTCTTATCTGGAAGTTCGATTTCTCGCCTTTTATGGTCTTGATCATTGCCATCCTAAATGATGGAACCATCATGACCATTTCAAAGGATAGGGTCAAGCCATCACCAGTGCCAGACTCATGGAAACTCAAAGAAATTTTTGCTACTGGTGTTGTTCTTGGAACATACATGGCCCTCATGACCAACACATTTGGTGTAAAGCCACTTAAAGATCTTGCTGAGATGAATTCTGCTCTCTATCTTCAAGTGAGCATCATCAGTCAAGCTCTCATCTTTGTCACCAGGTCAAGAAGTTGGTCTTTTGTTGAATGCCCTGGTATCTTGCTAGTTATTGCCTTCATTGCTGCTCAATTGGTTGCCACTCTAATTGCTGTATATTCTGAATGGGACTTTGCAAGGATCAAAGGTATTGATTGGGGATGGGCAGGATCCATCTGGGTATTCAGCATTGTTACTTACTTCCCACTTGATGTTCTCAAATTCGCAATTCGTTACGGTCTTAGCGGCAAGGCTTGGGATAACATGCTTGAGAATAAGACGGCATTTACGACTAAGAAGGATTACGGAAAAGGCGAAAGGGAGGCACAATGGGCAACAGCGCAACGTACGATGCACGGCCTACAACCACCAGAAACCTTATTTCATGAAAAGAGCAACTATGAGGAGCTTTCAGAGATTGCAGAGCAAGCAAAGAAAAGGGCTGAAGTTGCTAGGCCATTTACCATGGCTTCTCAAGCTCTCACTGACTACGAGCGCCAGAGGCTCGAGAACATTCGCCGCAACGATGAAATGATGGCCGCCCTCAAGCTCCAATCCAAAGCCTCTGAACTCTCCGCTGCTTCCAAGCGTCAAAGAGTTGAAACTAAATCGGAAAAGGTTTATCCGAAAACCAAACCTAAAAACGAGACTCCGATGGTTTTACGGCGCTCTTTGCGCGCTAGAGGCATTCCTCCCGATGCCAAAAAAGTTGTAGATGATCCTACGGAGCCGGCTACTAAGATTCGGAAGTCAGATACCAAGTCCAAAGACTCCAAGCCTTCGCCTCGTGTTTTAGGCCCTCTTAAAATGATTGAAGTTTGTAGTGAGAGGGAGTCTCATCCGTCTCTGATTGAATCTATTTTGGGTATTTCGAATAAATCTCTGTTGAGTAGGTCAGTGAAAGATGATGTTAAGGATTTTAAATTGGAGGAAGGCAATGGGAATTTCCCGAATGAGATAAAGACTGAAGGAGGGGGAGATGTGAATTGTTTGAAGATGGAGCCTATTGATAATTATCCGAATTTAGTTAAAACAGAGCCTGAAGAACTTACTAGTGACATTAAAGGTCACTTGATGAGTTCGATTAAGATGGAACATAAGAATTATGGAAGTCGCTTAAAGCCTGCGTCTTTGGTTCTGAATGCCGACAACATAGCTCGGGTTGTTCCTGGTAGAATAATGGCAGTGAGGTTTTTCCCTTGTCGTGATTCTAGAATGATTGTTGTAGGTAACAAGTTTGGGGAAGTTGGGTTTTGGAATGCTGATCACGAAGCAGAGGAAGGAAATGGAGTTTATTTATATCATCTGCATTCGGGTCCCGTTTCTGGGATTTCAATTCAACGACATGCATTGTCGAAGGTTTATACCAGTTGCTATGATGGATTTATACGATTGATGGATGTGGAGAAAGAGATGTTTGATCTTGTGTATCGTAATGAAGATACTGTATATTCTCTCTCTCAACAATCAAATGATGCAAACTGCTTATATTTTGCTGAGGGTCGTGGAGGGTTGAATATATGGGATAAAAGGACTGGAAACTGCCCAATGGAATGGACGTTGCATGAAGATAGGATCAATTCCATCGATTTTAATGTAGAAAATTGCAACATCATGGCTACTAGTTCTAGTGATGGAACTGCCTGTATTTGGGATTTGAGAAGTGTTAATGCTGAAAAGCCCAAAACCTTGACGACGATCAGCCACAAAAGGGCGATTCATTCTGCTTACTTCTCACCCTCTGGACGCTTCCTTGCAACTACTAGAGCAATATGGGGTTGGGATGACTCATACGTTTTCATTGGAAATATGAAGAGAGCAGTAGATGTTATTTCATGGGCACACCCGAAGAGAGTCTTCGTTTTGCAGAGCCCCAACATATCAGCAATACCGTGCAGGTTCGATGCGCACCCTTATGATGTTGGAACATTAGCAGGAGCCACGAGCGGGGGCCAGGTTTATATGTGGACAATGAGTCAAGATATATAA 3462 43.13 MGDISLEDVKNENIDLERIPVEEVFEQLKCTKEGLTTAEGEKRLQIFGPNKLEEKKESKLLTFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIIVLLIINSTISFIEENNAGNAAAALMAGLAPKTKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKIIDLCELKGEIRKKAHDIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTNTFGVKPLKDLAEMNSALYLQVSIISQALIFVTRSRSWSFVECPGILLVIAFIAAQLVATLIAVYSEWDFARIKGIDWGWAGSIWVFSIVTYFPLDVLKFAIRYGLSGKAWDNMLENKTAFTTKKDYGKGEREAQWATAQRTMHGLQPPETLFHEKSNYEELSEIAEQAKKRAEVARPFTMASQALTDYERQRLENIRRNDEMMAALKLQSKASELSAASKRQRVETKSEKVYPKTKPKNETPMVLRRSLRARGIPPDAKKVVDDPTEPATKIRKSDTKSKDSKPSPRVLGPLKMIEVCSERESHPSLIESILGISNKSLLSRSVKDDVKDFKLEEGNGNFPNEIKTEGGGDVNCLKMEPIDNYPNLVKTEPEELTSDIKGHLMSSIKMEHKNYGSRLKPASLVLNADNIARVVPGRIMAVRFFPCRDSRMIVVGNKFGEVGFWNADHEAEEGNGVYLYHLHSGPVSGISIQRHALSKVYTSCYDGFIRLMDVEKEMFDLVYRNEDTVYSLSQQSNDANCLYFAEGRGGLNIWDKRTGNCPMEWTLHEDRINSIDFNVENCNIMATSSSDGTACIWDLRSVNAEKPKTLTTISHKRAIHSAYFSPSGRFLATTRAIWGWDDSYVFIGNMKRAVDVISWAHPKRVFVLQSPNISAIPCRFDAHPYDVGTLAGATSGGQVYMWTMSQDI 1153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20654344 20664322 + Lsi06G010450.1 Lsi06g01045 665775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01045 1153 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1010 1046 - -
Lsi06g01045 1153 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Lsi06g01045 1153 MobiDBLite consensus disorder prediction 685 712 - -
Lsi06g01045 1153 Gene3D - 229 365 IPR023214 -
Lsi06g01045 1153 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Lsi06g01045 1153 Gene3D - 875 1151 IPR015943 GO:0005515
Lsi06g01045 1153 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 570 IPR023298 -
Lsi06g01045 1153 Gene3D - 366 540 - -
Lsi06g01045 1153 ProSitePatterns Trp-Asp (WD) repeats signature. 1030 1044 IPR019775 -
Lsi06g01045 1153 ProSiteProfiles Trp-Asp (WD) repeats profile. 1010 1052 IPR001680 GO:0005515
Lsi06g01045 1153 PANTHER PLASMA MEMBRANE ATPASE 170 654 - -
Lsi06g01045 1153 PANTHER PLASMA MEMBRANE ATPASE 1 135 - -
Lsi06g01045 1153 Gene3D - 623 660 - -
Lsi06g01045 1153 SUPERFAMILY WD40 repeat-like 829 1150 IPR036322 GO:0005515
Lsi06g01045 1153 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 303 415 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 PANTHER PLASMA MEMBRANE ATPASE 135 171 - -
Lsi06g01045 1153 PRINTS H+-transporting ATPase (proton pump) signature 485 506 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 PRINTS H+-transporting ATPase (proton pump) signature 328 344 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 PRINTS H+-transporting ATPase (proton pump) signature 185 203 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 PRINTS H+-transporting ATPase (proton pump) signature 300 316 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 PRINTS H+-transporting ATPase (proton pump) signature 359 384 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01045 1153 MobiDBLite consensus disorder prediction 719 750 - -
Lsi06g01045 1153 Pfam haloacid dehalogenase-like hydrolase 220 342 - -
Lsi06g01045 1153 MobiDBLite consensus disorder prediction 677 755 - -
Lsi06g01045 1153 Gene3D - 33 134 - -
Lsi06g01045 1153 PANTHER CALCIUM-TRANSPORTING ATPASE 1 135 - -
Lsi06g01045 1153 Gene3D - 65 119 - -
Lsi06g01045 1153 Coils Coil 622 642 - -
Lsi06g01045 1153 PRINTS P-type cation-transporting ATPase superfamily signature 223 234 - -
Lsi06g01045 1153 PRINTS P-type cation-transporting ATPase superfamily signature 351 363 - -
Lsi06g01045 1153 PRINTS P-type cation-transporting ATPase superfamily signature 328 347 - -
Lsi06g01045 1153 PRINTS P-type cation-transporting ATPase superfamily signature 245 255 - -
Lsi06g01045 1153 SMART WD40_4 918 958 IPR001680 GO:0005515
Lsi06g01045 1153 SMART WD40_4 1003 1043 IPR001680 GO:0005515
Lsi06g01045 1153 SMART WD40_4 1051 1086 IPR001680 GO:0005515
Lsi06g01045 1153 PANTHER CALCIUM-TRANSPORTING ATPASE 170 654 - -
Lsi06g01045 1153 PANTHER CALCIUM-TRANSPORTING ATPASE 135 171 - -
Lsi06g01045 1153 Gene3D - 166 228 IPR023299 GO:0000166
Lsi06g01045 1153 SUPERFAMILY HAD-like 220 374 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01045 Lsi-Chr6:20654344 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi10g01432 Lsi-Chr10:18401481 Lsi06g01045 Lsi-Chr6:20654344 7.95E-10 transposed
Lsi11g00377 Lsi-Chr11:3879425 Lsi06g01045 Lsi-Chr6:20654344 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01045 K01535 - csv:101214655 889.412