Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01054 ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACGCCAGTCGCTACTACTGGTCGAAATCCGCAAAGGTTTATCTCCCAGAATCCCTGCGACATTGCCAGTGCAGACACTGTGCCCGTTCCTTGTAAGGGGAACGTCTCTGATATGGGATTTGTTGAGCTAGGATATGGAAATGTGGTTGCTGGTGTAACTGCATGGTGCCCTCGAATGCCTCCGCCCCTTACGCATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTAATCTGAATGTCATGGGCAATCCGGGTGGTGCCAATGCCATTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTTGAGTCATCGACTTGGGGGAGGTGGTATGGAATTTGTGAGCAATAATGTCTCAATGGGGTCTGGGGATAGTGCCAATTTATGCAATAAGGTGACTGCCAATGGTGATCAGATTAGTACTGATAGTACTTCTGGATTTAGCTCTCACTTGGGGAATTCGGTTGGAGGGAATGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTTGAAAAAGAAAGTTAAGTTTATGTGCAGTTTCGGTGGCAAGATTTTTCCTAGACCGAGTGATGGTATGTTAAGATACATTGGAGGCCAAACAAGGATTATAAGTGTCAGGAAAGATGTGACTTTCAATGAGCTTTTGCGAAAGATGGTTGATACGTGTGGGCAGGCTGTGGTTGTAAAGTATCAGCTCCCCGATGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTACGAGAAGCTGGTTGAGAAGTCTCCAGATGGATCGACTAAATTGAGGATGTTTTTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCAGGATAGTGGGCAGAGATATGTTGAAACAGCGAATGAGATATTTGATGGCGTTGGTGGTCGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAGAATTCTGACTTGAGTGGGACCGAGGCGATGGATATCACAAATAACGATCTAGGGGTTGTGAGTGGGCCTCCATCCACAACATTGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTAGTGAAGGTAGATCCCGTCTCTGCAGTTTTCGTAGATGCCTCTGCTGTTCCATCAAGTGTTCCTGTGGTTAACTCTGTTCCTCCTGAAGCTTCTTCTCAGCCTGAGGTGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTATTGACTTTCCTCCACCTGTGTCTCAATTACAGCCTACTGGTGATACTCGGCAAGCAGCATGTGTGGACTTTATACAATTTCGTCCACAATTAGGCTTTTCAAACTCCCATCATTTAGGGTCATCTGGGTCTGTGTTTTTACAACAGCCAAATACTCTTGGAATTACCCCTCATCAGTTTGTCCCTGCAGTTCACATGACGATGGCCCCCTCTTCTTCTCATCTCAGTATTATGCCAAATACCTATCAATCGTTGGTTCAATATCCACAATCCCAGACGCAATATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACTCCAGGTTCCAGCTCCTCCAGTATCAGTAGGGGTTGGATTTGGTTTACATCAGGTACCGCAGTCTGATCAGACAGTTACATCTGATGAATTGGTATCCCATCATCAGGCAACTTTTTCTGAGAAAATCGAGAGGTTGGATGACTGTTATTTCTGCCAGAAAGCGGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACGATGTATCTGATTCAAATTTTTTGTATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCGATGAAAAATATTACAGAAACTGGAGCTTTGGGGCAACAAACTACTGAACATGGTGTTGGAATGCAAACTAGGATCTTTAATCCCATGGATCCAGAAGGTGAAAAACCTTCAGTGGAGGCTATTGGCTTACCACATCGTATTGAGAGTCAACATGAGAACGACAACAATCTAAAAGATCAACATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGCTCTTGGGAGGCAAGGTGATATTCGGTCACCCCATGTTGCTGTTGCAGAACAGATTCGTCAGTCTGGCGAAGTTGATACTCTCCAGCACCATCATGTAGCTGTAGAGAGTCAATTCCATCCAAATTTAGTCCTGGATAAACATGATATTTTCTTTGGAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATCCAAAAGTGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCTACCCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTTAAGTATATGCCCAAATGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAAACAACTAGGAAGAAGGACAATTTTGGCGGCTGTTCACAACCAGTCTTAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATAGTGGTTCTCGACCCAAATCACATAAAACCAACTACTTTTGCTTGCTCTTCATCAGAGGTTTCCTATTTGATGAGTGAACGACTTGTTGAGTCCAGTGAAGTGGCACGACCTCCTGTCAGGGGCTCTCCCGGGACATTACCACAAACAGAAAATGGGATACAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATAAAGACTGAGCATATAAATAATGAAGTCCCACTTTCTGCTGAGTGGAAGGAAGACACCTCTCTATTCGAATCCAGGATGGTATCTGGTGATGTTGAATCCGTATCTTTGCCTATCAGGCCTGGAAATGCGCAGGACACTGCGAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTACAGCATGATGCTCATCTTTTGCCGCCTAGACCAACTAAAGTTCAACCGAGGAATGAAGCCTTTGCCACCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGCGAACTAAATGTGGAAACATTACTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAACAAGGGCTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCAGGTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATTCAGTTTGTGAGACTAGCACCGGAGGAGATGTTCAAAATATTGATGATGGCAGGACTAGACATTCAGAAAAAGCAAACCTTAGTCTTCCAATGTCAGAAGGCTTTGGCCGCTTGCAGGTAATAAAGAATAGCGATCTTGAAGAATTAAGAGAATTAGGTTCTGGCACCTTTGGCACTGTCTATCATGGAAAATGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTACGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGATAAGCGTAAGCGTCTCTTGATCGCTATGGATGCGGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTATTGTCTTGTGGGAGCTGCTTACTGGAGAAGAGCCCTACGCAAATTTGCATTATGGGATAATCATAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAAAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGTTCCATGGCTACCAAGGTTCCTCCGAAAGTACCCAACCAGCTGCAGTAG 4299 44.22 MAFDQNAIPTGLRPLNVARTLVEDPHLTPVATTGRNPQRFISQNPCDIASADTVPVPCKGNVSDMGFVELGYGNVVAGVTAWCPRMPPPLTHTATIPAVGFGYCSNLNVMGNPGGANAIELASSCMTVGINHSTNLSHRLGGGGMEFVSNNVSMGSGDSANLCNKVTANGDQISTDSTSGFSSHLGNSVGGNAVDQVSEEGGDGSILKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRKDVTFNELLRKMVDTCGQAVVVKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVEKSPDGSTKLRMFLFSASELDSSGMVQFGDLQDSGQRYVETANEIFDGVGGRITRKESFASATSTQNSDLSGTEAMDITNNDLGVVSGPPSTTLSLPGGNLGTAVAIGPGLVKVDPVSAVFVDASAVPSSVPVVNSVPPEASSQPEVELGRSVPVTLMQQQPGIDFPPPVSQLQPTGDTRQAACVDFIQFRPQLGFSNSHHLGSSGSVFLQQPNTLGITPHQFVPAVHMTMAPSSSHLSIMPNTYQSLVQYPQSQTQYFSNASTFGPRFVQLSAEQGYNSLQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHQATFSEKIERLDDCYFCQKAVPHAHSNSPLQDQRENLTNDVSDSNFLYYSHHPEDHLTAHPMKNITETGALGQQTTEHGVGMQTRIFNPMDPEGEKPSVEAIGLPHRIESQHENDNNLKDQHNLDHGRISALQGALGRQGDIRSPHVAVAEQIRQSGEVDTLQHHHVAVESQFHPNLVLDKHDIFFGGAPILASEYNTHENPKVYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESLSICPNDICANLDHCKSPIETTRKKDNFGGCSQPVLEREVLLDNNFVKPIVVLDPNHIKPTTFACSSSEVSYLMSERLVESSEVARPPVRGSPGTLPQTENGIQHLESNEVCHSRNPHLFDIKTEHINNEVPLSAEWKEDTSLFESRMVSGDVESVSLPIRPGNAQDTANSLFSNQDPWNLQHDAHLLPPRPTKVQPRNEAFATREPLTESPFRNIGELNVETLLDDGVCHPLVNSNKGSSEEQIRKDLQAVAEGVAASVLQSGQSSSSELHERIDSVCETSTGGDVQNIDDGRTRHSEKANLSLPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIEWRSLMERCWSSKPSERPSFTEIAHELRSMATKVPPKVPNQLQ 1432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20762578 20769204 - Lsi06G010540.1 Lsi06g01054 665784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01054 1432 ProSiteProfiles Protein kinase domain profile. 1171 1417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01054 1432 Gene3D - 232 314 - -
Lsi06g01054 1432 ProSitePatterns Protein kinases ATP-binding region signature. 1177 1208 IPR017441 GO:0005524
Lsi06g01054 1432 Pfam Protein tyrosine and serine/threonine kinase 1172 1384 IPR001245 GO:0004672|GO:0006468
Lsi06g01054 1432 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 172 1423 - -
Lsi06g01054 1432 CDD STKc_MAP3K-like 1177 1416 - -
Lsi06g01054 1432 Pfam PB1 domain 230 313 IPR000270 GO:0005515
Lsi06g01054 1432 SUPERFAMILY CAD & PB1 domains 226 318 - -
Lsi06g01054 1432 SUPERFAMILY Protein kinase-like (PK-like) 1161 1416 IPR011009 -
Lsi06g01054 1432 SMART PB1_new 225 314 IPR000270 GO:0005515
Lsi06g01054 1432 Gene3D Transferase(Phosphotransferase) domain 1 1157 1430 - -
Lsi06g01054 1432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1296 1308 IPR008271 GO:0004672|GO:0006468
Lsi06g01054 1432 CDD PB1_UP2 214 312 - -
Lsi06g01054 1432 SMART serkin_6 1171 1419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01054 1432 PANTHER SERINE-THREONINE PROTEIN KINASE 172 1423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01054 Lsi-Chr6:20762578 Lsi10g01517 Lsi-Chr10:19440262 1.25E-35 dispersed
Lsi08g01645 Lsi-Chr8:24315388 Lsi06g01054 Lsi-Chr6:20762578 1.33E-28 dispersed
Lsi06g01054 Lsi-Chr6:20762578 Lsi02g00547 Lsi-Chr2:4789698 1.18E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83729 PF07714 PK_Tyr_Ser-Thr 1.50E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01054 - - csv:101203826 2380.52