Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01054 | ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACGCCAGTCGCTACTACTGGTCGAAATCCGCAAAGGTTTATCTCCCAGAATCCCTGCGACATTGCCAGTGCAGACACTGTGCCCGTTCCTTGTAAGGGGAACGTCTCTGATATGGGATTTGTTGAGCTAGGATATGGAAATGTGGTTGCTGGTGTAACTGCATGGTGCCCTCGAATGCCTCCGCCCCTTACGCATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTAATCTGAATGTCATGGGCAATCCGGGTGGTGCCAATGCCATTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTTGAGTCATCGACTTGGGGGAGGTGGTATGGAATTTGTGAGCAATAATGTCTCAATGGGGTCTGGGGATAGTGCCAATTTATGCAATAAGGTGACTGCCAATGGTGATCAGATTAGTACTGATAGTACTTCTGGATTTAGCTCTCACTTGGGGAATTCGGTTGGAGGGAATGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTTGAAAAAGAAAGTTAAGTTTATGTGCAGTTTCGGTGGCAAGATTTTTCCTAGACCGAGTGATGGTATGTTAAGATACATTGGAGGCCAAACAAGGATTATAAGTGTCAGGAAAGATGTGACTTTCAATGAGCTTTTGCGAAAGATGGTTGATACGTGTGGGCAGGCTGTGGTTGTAAAGTATCAGCTCCCCGATGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTACGAGAAGCTGGTTGAGAAGTCTCCAGATGGATCGACTAAATTGAGGATGTTTTTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGCAATTTGGCGATTTGCAGGATAGTGGGCAGAGATATGTTGAAACAGCGAATGAGATATTTGATGGCGTTGGTGGTCGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAGAATTCTGACTTGAGTGGGACCGAGGCGATGGATATCACAAATAACGATCTAGGGGTTGTGAGTGGGCCTCCATCCACAACATTGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTAGTGAAGGTAGATCCCGTCTCTGCAGTTTTCGTAGATGCCTCTGCTGTTCCATCAAGTGTTCCTGTGGTTAACTCTGTTCCTCCTGAAGCTTCTTCTCAGCCTGAGGTGGAGTTAGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTATTGACTTTCCTCCACCTGTGTCTCAATTACAGCCTACTGGTGATACTCGGCAAGCAGCATGTGTGGACTTTATACAATTTCGTCCACAATTAGGCTTTTCAAACTCCCATCATTTAGGGTCATCTGGGTCTGTGTTTTTACAACAGCCAAATACTCTTGGAATTACCCCTCATCAGTTTGTCCCTGCAGTTCACATGACGATGGCCCCCTCTTCTTCTCATCTCAGTATTATGCCAAATACCTATCAATCGTTGGTTCAATATCCACAATCCCAGACGCAATATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACTCCAGGTTCCAGCTCCTCCAGTATCAGTAGGGGTTGGATTTGGTTTACATCAGGTACCGCAGTCTGATCAGACAGTTACATCTGATGAATTGGTATCCCATCATCAGGCAACTTTTTCTGAGAAAATCGAGAGGTTGGATGACTGTTATTTCTGCCAGAAAGCGGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACGATGTATCTGATTCAAATTTTTTGTATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCGATGAAAAATATTACAGAAACTGGAGCTTTGGGGCAACAAACTACTGAACATGGTGTTGGAATGCAAACTAGGATCTTTAATCCCATGGATCCAGAAGGTGAAAAACCTTCAGTGGAGGCTATTGGCTTACCACATCGTATTGAGAGTCAACATGAGAACGACAACAATCTAAAAGATCAACATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGCTCTTGGGAGGCAAGGTGATATTCGGTCACCCCATGTTGCTGTTGCAGAACAGATTCGTCAGTCTGGCGAAGTTGATACTCTCCAGCACCATCATGTAGCTGTAGAGAGTCAATTCCATCCAAATTTAGTCCTGGATAAACATGATATTTTCTTTGGAGGTGCTCCTATCCTTGCTTCAGAGTACAACACTCACGAAAATCCAAAAGTGTACTCTAATAGTCATCATGGCATTATTCCAAACCAAAATGCTACCCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTTAAGTATATGCCCAAATGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAAACAACTAGGAAGAAGGACAATTTTGGCGGCTGTTCACAACCAGTCTTAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATAGTGGTTCTCGACCCAAATCACATAAAACCAACTACTTTTGCTTGCTCTTCATCAGAGGTTTCCTATTTGATGAGTGAACGACTTGTTGAGTCCAGTGAAGTGGCACGACCTCCTGTCAGGGGCTCTCCCGGGACATTACCACAAACAGAAAATGGGATACAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATAAAGACTGAGCATATAAATAATGAAGTCCCACTTTCTGCTGAGTGGAAGGAAGACACCTCTCTATTCGAATCCAGGATGGTATCTGGTGATGTTGAATCCGTATCTTTGCCTATCAGGCCTGGAAATGCGCAGGACACTGCGAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTACAGCATGATGCTCATCTTTTGCCGCCTAGACCAACTAAAGTTCAACCGAGGAATGAAGCCTTTGCCACCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGCGAACTAAATGTGGAAACATTACTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAACAAGGGCTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCAGGTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATTCAGTTTGTGAGACTAGCACCGGAGGAGATGTTCAAAATATTGATGATGGCAGGACTAGACATTCAGAAAAAGCAAACCTTAGTCTTCCAATGTCAGAAGGCTTTGGCCGCTTGCAGGTAATAAAGAATAGCGATCTTGAAGAATTAAGAGAATTAGGTTCTGGCACCTTTGGCACTGTCTATCATGGAAAATGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATTAAGCTTGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTACGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGATAAGCGTAAGCGTCTCTTGATCGCTATGGATGCGGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTATTGTCTTGTGGGAGCTGCTTACTGGAGAAGAGCCCTACGCAAATTTGCATTATGGGATAATCATAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAAAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGTTCCATGGCTACCAAGGTTCCTCCGAAAGTACCCAACCAGCTGCAGTAG | 4299 | 44.22 | MAFDQNAIPTGLRPLNVARTLVEDPHLTPVATTGRNPQRFISQNPCDIASADTVPVPCKGNVSDMGFVELGYGNVVAGVTAWCPRMPPPLTHTATIPAVGFGYCSNLNVMGNPGGANAIELASSCMTVGINHSTNLSHRLGGGGMEFVSNNVSMGSGDSANLCNKVTANGDQISTDSTSGFSSHLGNSVGGNAVDQVSEEGGDGSILKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRKDVTFNELLRKMVDTCGQAVVVKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVEKSPDGSTKLRMFLFSASELDSSGMVQFGDLQDSGQRYVETANEIFDGVGGRITRKESFASATSTQNSDLSGTEAMDITNNDLGVVSGPPSTTLSLPGGNLGTAVAIGPGLVKVDPVSAVFVDASAVPSSVPVVNSVPPEASSQPEVELGRSVPVTLMQQQPGIDFPPPVSQLQPTGDTRQAACVDFIQFRPQLGFSNSHHLGSSGSVFLQQPNTLGITPHQFVPAVHMTMAPSSSHLSIMPNTYQSLVQYPQSQTQYFSNASTFGPRFVQLSAEQGYNSLQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHQATFSEKIERLDDCYFCQKAVPHAHSNSPLQDQRENLTNDVSDSNFLYYSHHPEDHLTAHPMKNITETGALGQQTTEHGVGMQTRIFNPMDPEGEKPSVEAIGLPHRIESQHENDNNLKDQHNLDHGRISALQGALGRQGDIRSPHVAVAEQIRQSGEVDTLQHHHVAVESQFHPNLVLDKHDIFFGGAPILASEYNTHENPKVYSNSHHGIIPNQNATHTGICYDHLRPIVGNLESLSICPNDICANLDHCKSPIETTRKKDNFGGCSQPVLEREVLLDNNFVKPIVVLDPNHIKPTTFACSSSEVSYLMSERLVESSEVARPPVRGSPGTLPQTENGIQHLESNEVCHSRNPHLFDIKTEHINNEVPLSAEWKEDTSLFESRMVSGDVESVSLPIRPGNAQDTANSLFSNQDPWNLQHDAHLLPPRPTKVQPRNEAFATREPLTESPFRNIGELNVETLLDDGVCHPLVNSNKGSSEEQIRKDLQAVAEGVAASVLQSGQSSSSELHERIDSVCETSTGGDVQNIDDGRTRHSEKANLSLPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIEWRSLMERCWSSKPSERPSFTEIAHELRSMATKVPPKVPNQLQ | 1432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 20762578 | 20769204 | - | Lsi06G010540.1 | Lsi06g01054 | 665784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01054 | 1432 | ProSiteProfiles | Protein kinase domain profile. | 1171 | 1417 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g01054 | 1432 | Gene3D | - | 232 | 314 | - | - | |
Lsi06g01054 | 1432 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1177 | 1208 | IPR017441 | GO:0005524 | |
Lsi06g01054 | 1432 | Pfam | Protein tyrosine and serine/threonine kinase | 1172 | 1384 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi06g01054 | 1432 | PANTHER | KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN | 172 | 1423 | - | - | |
Lsi06g01054 | 1432 | CDD | STKc_MAP3K-like | 1177 | 1416 | - | - | |
Lsi06g01054 | 1432 | Pfam | PB1 domain | 230 | 313 | IPR000270 | GO:0005515 | |
Lsi06g01054 | 1432 | SUPERFAMILY | CAD & PB1 domains | 226 | 318 | - | - | |
Lsi06g01054 | 1432 | SUPERFAMILY | Protein kinase-like (PK-like) | 1161 | 1416 | IPR011009 | - | |
Lsi06g01054 | 1432 | SMART | PB1_new | 225 | 314 | IPR000270 | GO:0005515 | |
Lsi06g01054 | 1432 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1157 | 1430 | - | - | |
Lsi06g01054 | 1432 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1296 | 1308 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi06g01054 | 1432 | CDD | PB1_UP2 | 214 | 312 | - | - | |
Lsi06g01054 | 1432 | SMART | serkin_6 | 1171 | 1419 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi06g01054 | 1432 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 172 | 1423 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01054 | Lsi-Chr6:20762578 | Lsi10g01517 | Lsi-Chr10:19440262 | 1.25E-35 | dispersed | |
Lsi08g01645 | Lsi-Chr8:24315388 | Lsi06g01054 | Lsi-Chr6:20762578 | 1.33E-28 | dispersed | |
Lsi06g01054 | Lsi-Chr6:20762578 | Lsi02g00547 | Lsi-Chr2:4789698 | 1.18E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83729 | PF07714 | PK_Tyr_Ser-Thr | 1.50E-47 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01054 | - | - | csv:101203826 | 2380.52 |