Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01056 ATGGCGACCAGGCTTATGTTTGAGAACTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTGCCTTTGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGAACTTCAGCACTTGAGGAACAGTCTACCAGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTATCTGCTTTGGGGAATACAATTGCTTGTAATGATCATGTTGCTCTCACGCATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTTCTCGTGGGAAGCTACTGTAATTTCACAAATAGGGGTGGCTTGGTTCATCCACATACATCTGTTGAGGATTTGGACGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCCGACACCACTGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTACGTGTGA 693 44.88 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELGGVIPVVKTSIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20791878 20795698 - Lsi06G010560.1 Lsi06g01056 665786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01056 230 CDD IF6 2 208 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 Gene3D - 1 210 - -
Lsi06g01056 230 Hamap Translation initiation factor 6 [eif6]. 1 230 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 SMART eIF6neu2 3 189 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 230 - -
Lsi06g01056 230 Pfam eIF-6 family 4 188 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 PIRSF Transl_init_IF-6 1 211 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 230 IPR002769 GO:0042256|GO:0043022
Lsi06g01056 230 SUPERFAMILY Pentein 1 209 - -
Lsi06g01056 230 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 209 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01056 Lsi-Chr6:20791878 Lsi10g00762 Lsi-Chr10:10452561 2.48E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01056 K03264 - csv:101212091 418.698