Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01056 | ATGGCGACCAGGCTTATGTTTGAGAACTCTTGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTGCCTTTGAAACTGAATTAGGTGGTGTCATTCCGGTTGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTTTGTGCTGAACTTCAGCACTTGAGGAACAGTCTACCAGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTATCTGCTTTGGGGAATACAATTGCTTGTAATGATCATGTTGCTCTCACGCATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTTCTCGTGGGAAGCTACTGTAATTTCACAAATAGGGGTGGCTTGGTTCATCCACATACATCTGTTGAGGATTTGGACGAGCTATCAACCCTTCTTCAAGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGACTGGACTGCATTTTGTGGTTCCGACACCACTGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGACAGTTACGTGTGA | 693 | 44.88 | MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSAFETELGGVIPVVKTSIDGTRIIGRLCAELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCNFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 20791878 | 20795698 | - | Lsi06G010560.1 | Lsi06g01056 | 665786 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01056 | 230 | CDD | IF6 | 2 | 208 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | Gene3D | - | 1 | 210 | - | - | |
Lsi06g01056 | 230 | Hamap | Translation initiation factor 6 [eif6]. | 1 | 230 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | SMART | eIF6neu2 | 3 | 189 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 1 | 230 | - | - | |
Lsi06g01056 | 230 | Pfam | eIF-6 family | 4 | 188 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | PIRSF | Transl_init_IF-6 | 1 | 211 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 1 | 230 | IPR002769 | GO:0042256|GO:0043022 | |
Lsi06g01056 | 230 | SUPERFAMILY | Pentein | 1 | 209 | - | - | |
Lsi06g01056 | 230 | TIGRFAM | eIF-6: putative translation initiation factor eIF-6 | 4 | 209 | IPR002769 | GO:0042256|GO:0043022 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01056 | Lsi-Chr6:20791878 | Lsi10g00762 | Lsi-Chr10:10452561 | 2.48E-166 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01056 | K03264 | - | csv:101212091 | 418.698 |