Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01084 ATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAAAAAGGAAGACAAGGGCCAAACTCATGATATTGGAAAGGGAGGGAGTGCATATGATGACGAGGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTCCCGCTAACGACGTACCAAAAAGAACTGAAGGAAATGGAGGGCCAATCGAGAGAAGAATACATCGGGTCATTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGGTACAAAATTAATTTACACCATCATAATGGTAGATGGGAAGCTAGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGGTGTGTATTTATCGACGCAAGAAGAAGCAGCCACAGCGTACGATATTGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACAACAACATCCTAACCGTCGATTCCATGCTCCCAAGCCCTAAACAAGAACTCGATCTAGGTCTCTTCCCGTCGGACCAAAATCGAAGCAGCACTGATTCGGCGACGACTGAACCAATTGCCTTACCTCCATCACACCGATCGACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGATTGTCCATCGACGCCGTCATCGTCGGAGCAGCTCGAACGGCGACGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCGGGATCTTACTGCTATGGAGAAGTGGACGACGCAATTTTTAGCGACTTCAATTCTTTCATTCCGCCGCCGCTGTCGCAGTACGATTTCGCCGATTAG 960 47.6 MRLICGIRIAGMNRRTKKEDKGQTHDIGKGGSAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARYKINLHHHNGRWEARIGRVFGNKYLYLGTYGVYLSTQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNNNILTVDSMLPSPKQELDLGLFPSDQNRSSTDSATTEPIALPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATDCPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEVDDAIFSDFNSFIPPPLSQYDFAD 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21114522 21119019 + Lsi06G010840.1 Lsi06g01084 665814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01084 319 Gene3D AP2/ERF domain 96 166 IPR036955 GO:0003700|GO:0006355
Lsi06g01084 319 Gene3D AP2/ERF domain 13 63 IPR036955 GO:0003700|GO:0006355
Lsi06g01084 319 ProSiteProfiles AP2/ERF domain profile. 33 61 IPR001471 GO:0003700|GO:0006355
Lsi06g01084 319 SUPERFAMILY DNA-binding domain 96 166 IPR016177 GO:0003677
Lsi06g01084 319 SMART rav1_2 8 67 IPR001471 GO:0003700|GO:0006355
Lsi06g01084 319 SMART rav1_2 97 170 IPR001471 GO:0003700|GO:0006355
Lsi06g01084 319 MobiDBLite consensus disorder prediction 206 231 - -
Lsi06g01084 319 ProSiteProfiles AP2/ERF domain profile. 97 164 IPR001471 GO:0003700|GO:0006355
Lsi06g01084 319 CDD AP2 96 166 IPR001471 GO:0003700|GO:0006355
Lsi06g01084 319 SUPERFAMILY DNA-binding domain 33 62 IPR016177 GO:0003677
Lsi06g01084 319 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 298 - -
Lsi06g01084 319 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 27 298 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01084 Lsi11g00331 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02647 Lsi-Chr2:32891612 Lsi06g01084 Lsi-Chr6:21114522 1.59E-93 dispersed
Lsi03g01463 Lsi-Chr3:25509701 Lsi06g01084 Lsi-Chr6:21114522 9.63E-19 dispersed
Lsi06g01084 Lsi-Chr6:21114522 Lsi06g01180 Lsi-Chr6:22096693 2.92E-07 dispersed
Lsi06g01084 Lsi-Chr6:21114522 Lsi01g00869 Lsi-Chr1:7000981 8.42E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25507 PF00847 AP2 9.50E-05 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01084 K09285 - csv:101219103 501.901