Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01088 ATGGGTGCCATGCTGCTTCCTAAACTCCTCTGTTTCATCATTCTCTCTTCTGCCTTCCTTTGCCTTTCTTATGAACCTCGAAACCCTGAAGGTAATAAAGCTTCAACTTGTAGTTTAGCTACTAATTTCCATTCTCAAAGTTTCTTAATATGTGCCTCTGTCTATTGGGGTCGTTCCTTTTCTGCAGTGGAAGCTCTGATTAATGTGAAGACAGCATTGAATGATCCACACGGCGTTCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCTCCTGAGAATCTCAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGTAAGAGATCCGACCGTTTTGATTAGTTTAAATCCACTTAAGTCTTGTTTTCCTGCTGTTCTTGAAGCAAGAGATATGAAATCTCTTTGGAGTTTTGAATTTGTTTTGGTTGGATGTGTGATTTTCTTTGCCCTGCTGCTGCAGAATAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCCAACAACCGGTTCTCTGGCCCAATACCAGCATCTTTTGCTCATCTAAACGGTCTACGCTACCTGAGGCTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTAGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCGGCCAGAACATTCAATGTGGTGGGAAATCCTATGATATGTGGAACTAGTCCTAATGAAGGTTGCTCTGGTTCAGCCAACGCTGTTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGTAACTGGTGTTACTTATTTTCCCCTTCAAAACCCAACTCTGTTCCTATCTTGGGAAGACTTAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTTGGAATTCTTTGGCGCAGAAGAAATCAGAAGACCAAAACCATCTTAGACATCAATGTACACAATCATGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGAAACTTCACTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGATTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACAGGTACTACTGGAGAGTCCCAGTTTCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGATTAATTGGTTATTGCGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCGGCCTTGGATTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGTTGTACCTCCATGAGCAATGTGATCCTAAGATAATTCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTACTGCGAAGCCGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACCGTTGGGCACATCGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACCGATGTGTTTGGGTTTGGCATTCTTTTAATAGAGCTAATCACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTACTTTGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTAGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCTACCCACACTCATAATGACTTAAATGTCAACCTCTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTGAAGAATAATGGTAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGATGACGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCTGGTCCGAGATAG 2202 44.5 MGAMLLPKLLCFIILSSAFLCLSYEPRNPEGNKASTCSLATNFHSQSFLICASVYWGRSFSAVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLRSSEPVSFRKLVWGDWEPHKSSPSVRDPTVLISLNPLKSCFPAVLEARDMKSLWSFEFVLVGCVIFFALLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFAHLNGLRYLRLNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGTSPNEGCSGSANAVPLSFSLESSPGNWCYLFSPSKPNSVPILGRLRSKRIAVALGVSLSCAFLILLALGILWRRRNQKTKTILDINVHNHEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAATHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21174193 21178992 + Lsi06G010880.1 Lsi06g01088 665818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01088 733 Gene3D Phosphorylase Kinase; domain 1 358 464 - -
Lsi06g01088 733 SUPERFAMILY Protein kinase-like (PK-like) 367 658 IPR011009 -
Lsi06g01088 733 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 172 733 - -
Lsi06g01088 733 Pfam Protein tyrosine and serine/threonine kinase 391 657 IPR001245 GO:0004672|GO:0006468
Lsi06g01088 733 Pfam Leucine rich repeat N-terminal domain 63 99 IPR013210 -
Lsi06g01088 733 ProSiteProfiles Protein kinase domain profile. 388 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01088 733 MobiDBLite consensus disorder prediction 690 733 - -
Lsi06g01088 733 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 60 103 - -
Lsi06g01088 733 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Lsi06g01088 733 MobiDBLite consensus disorder prediction 690 707 - -
Lsi06g01088 733 SMART serkin_6 388 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01088 733 Gene3D Ribonuclease Inhibitor 61 282 IPR032675 -
Lsi06g01088 733 ProSitePatterns Protein kinases ATP-binding region signature. 394 416 IPR017441 GO:0005524
Lsi06g01088 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Lsi06g01088 733 SUPERFAMILY L domain-like 61 258 - -
Lsi06g01088 733 CDD TM_EGFR-like 320 353 - -
Lsi06g01088 733 Gene3D Transferase(Phosphotransferase) domain 1 465 676 - -
Lsi06g01088 733 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 172 733 - -
Lsi06g01088 733 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 60 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01088 Lsi-Chr6:21174193 Lsi09g00786 Lsi-Chr9:8919148 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83732 PF07714 PK_Tyr_Ser-Thr 2.90E-42 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01088 - - csv:101218629 1115.91