Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g01108 | ATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACTTACAAGGAGTTGCATGCGGCCACCAACGGTTTCCATGACGATAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTACAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGACTGAGGCACAAGAATTTGTTGGGTTTGAGAGGTTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGCTCTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAAGAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGTTACTAGACTCAGATTTCCATCCATTAGTAGCTGATTTCGGGTTTGCCAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGTGTCAAAGGAACCTTAGGTTATCTTGCTCCTGAATATGCCATGTGGGGCAAAGTTTCCGATAGCTGTGACGTTTTCAGCTACGGAATTCTTTTACTCGAACTGATGACCGGAAGGAAGCCAATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAATATCACAATAAACAAAGACAGATTCAAAGACTTAGCTGATAAGAAGCTCAAGGGACAGCTGAATTGGAAACAGTTCGAACAAGTAATGCATTTGGCAATCATGTGCGTCCAAACTGAGGCAGAGAAGCGGCCTACTATGAAACAAGTAGTGGAATGTTTGAAAGGATTGATGGCTGATGCTGGAAATTATAACAAAGTACCTGTATTAATGAGTATTCCAAGTGTTAGAGCATATGAAAATAATAATAATAATAATAATGAAGATCATCGTCATCAGCTGGTTAGCAAGGAATTTCATGGTGGAGGAGGAGATGATCAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAGGAGCAGAGGATTATAAGAGATTATCCTTACAATAATCATAAACAACCGTAA | 1176 | 42.26 | MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKRRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFHPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSDSCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADKKLKGQLNWKQFEQVMHLAIMCVQTEAEKRPTMKQVVECLKGLMADAGNYNKVPVLMSIPSVRAYENNNNNNNEDHRHQLVSKEFHGGGGDDQESFDYGVFSAIEEQRIIRDYPYNNHKQP | 391 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 21334888 | 21341102 | + | Lsi06G011080.1 | Lsi06g01108 | 665838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g01108 | 391 | PANTHER | OS01G0750732 PROTEIN | 1 | 339 | - | - | |
| Lsi06g01108 | 391 | Gene3D | Transferase(Phosphotransferase) domain 1 | 115 | 322 | - | - | |
| Lsi06g01108 | 391 | SMART | serkin_6 | 39 | 310 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi06g01108 | 391 | Pfam | Protein kinase domain | 39 | 308 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi06g01108 | 391 | ProSiteProfiles | Protein kinase domain profile. | 39 | 314 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Lsi06g01108 | 391 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 161 | 173 | IPR008271 | GO:0004672|GO:0006468 | |
| Lsi06g01108 | 391 | Gene3D | Phosphorylase Kinase; domain 1 | 11 | 114 | - | - | |
| Lsi06g01108 | 391 | CDD | STKc_IRAK | 45 | 313 | - | - | |
| Lsi06g01108 | 391 | ProSitePatterns | Protein kinases ATP-binding region signature. | 45 | 68 | IPR017441 | GO:0005524 | |
| Lsi06g01108 | 391 | PANTHER | PTI1-LIKE TYROSINE-PROTEIN KINASE | 1 | 339 | - | - | |
| Lsi06g01108 | 391 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 332 | IPR011009 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi06g01108 | Lsi11g00748 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g01108 | Lsi-Chr6:21334888 | Lsi07g00440 | Lsi-Chr7:4686133 | 3.93E-144 | dispersed | |
| Lsi06g01108 | Lsi-Chr6:21334888 | Lsi11g00260 | Lsi-Chr11:2621815 | 7.26E-85 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 83733 | PF00069 | Pkinase | 2.40E-45 | CL0016 | Lsi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g01108 | - | - | csv:101207264 | 704.131 |