Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01109 ATGGGAATTGCCGGTGATAGTGTTGTTAAGGGTTTTGGCGGCGGATGGGCCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCGGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGTGCCAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAGGTTTGTGAACAAGCTCCTGCTGTGGTCACGTGCAAGGCCGACGCTGCGGCTCTTTGTGTTACCTGTGATTCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTCTTCGACACTGCTGAATCAGTCGTTAAATCCTCTTCTGTTTTGAATTTTTTGGTTCCTAATGAAACCAACGCCAGTGCTTGCGACGGTGTCCATCACCACGAGGAGGTGGAGGTCGCCTCCTGGCTTTTATCAAACCCGTCATTCAACTCTAAGCTCGTTGACGGCTTTGAACTCAAACCGCCTGGCGCTGATCATTTGTTCTTCAATGAAATGGATTCTTTTATTGATTTTGAATATCCAAATCCAGTCAATAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGACTTTTGCAGATCCAAACTCAATTCATTCGGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCTTCTTCTTCTCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCGTACCCGTTGGGTCAAAACGTGAGTAACGGGGCAGATTTGGGGCTACCGTTGTCAGGAACCGGCAACCAAGCGACCCAATTGTGTGGAATGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACAATCCGATATGCTTCAAGAAAAGCTTATGCGGAAACCCGTCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATACGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTAACGGATGTCCAATACGGCGTCGTACCAACGAGCATGGGTGTCCGCGTGGACGCCACGTACCTCTCAACGTAG 1164 50.77 MGIAGDSVVKGFGGGWAVVAKPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASACDGVHHHEEVEVASWLLSNPSFNSKLVDGFELKPPGADHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNVSNGADLGLPLSGTGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVDEIYGSAASSVFLTDVQYGVVPTSMGVRVDATYLST 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21349276 21351115 - Lsi06G011090.1 Lsi06g01109 665839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01109 387 CDD Bbox1_BBX-like 22 65 - -
Lsi06g01109 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 374 IPR045281 GO:0009909
Lsi06g01109 387 Pfam CCT motif 302 344 IPR010402 GO:0005515
Lsi06g01109 387 SMART bboxneu5 18 65 IPR000315 GO:0008270
Lsi06g01109 387 SMART bboxneu5 66 108 IPR000315 GO:0008270
Lsi06g01109 387 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Lsi06g01109 387 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Lsi06g01109 387 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Lsi06g01109 387 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 374 - -
Lsi06g01109 387 CDD Bbox1_BBX-like 66 108 - -
Lsi06g01109 387 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01109 Lsi11g00747 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01109 Lsi-Chr6:21349276 Lsi07g00003 Lsi-Chr7:60412 5.81E-10 dispersed
Lsi11g00792 Lsi-Chr11:9260257 Lsi06g01109 Lsi-Chr6:21349276 9.96E-11 dispersed
Lsi11g01136 Lsi-Chr11:19836786 Lsi06g01109 Lsi-Chr6:21349276 2.89E-15 dispersed
Lsi11g01330 Lsi-Chr11:21919157 Lsi06g01109 Lsi-Chr6:21349276 9.93E-10 dispersed
Lsi07g00983 Lsi-Chr7:13335795 Lsi06g01109 Lsi-Chr6:21349276 1.82E-50 transposed
Lsi08g01266 Lsi-Chr8:21077088 Lsi06g01109 Lsi-Chr6:21349276 3.24E-109 transposed
Lsi11g00747 Lsi-Chr11:8272990 Lsi06g01109 Lsi-Chr6:21349276 3.81E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25509 PF00643 zf-B_box 8.10E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01109 - - csv:101214816 704.131