Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01124 ATGCAGAGGCAGACAAGGTATATGGAGAGGACGAACTCCATGAGGGAGAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTACCAGAGCGAAAGCGACCAGCTTTAGCTAGTGTGATTGTAGAAGCCCTGAAGGTGGATAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGTTGAGAAGTTTCTTAAAATCTTAATATTTATTGAATCGATTTTACAAGAGTTCAAATGTGTTTTGTTGCAAGCTTTTCACTTTGTTTGTGGGTCTTCTCCTAAAAGGATTGAAGGTCCCGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTGTTCACTGGAGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATCCATGTCGTTCTGGTTGATGCCAACACAGGCCATGTAGTAACGTCTGGACAGGAAGCCTTGTCTAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACAGAGGAAGAATTTGAAAGTCATGTCGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGAGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTCGGGTTAAAGGTGGCTTCAGGATTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAACATTACCCACCTGCATTAAATGATGAGGTGTGGAGATTGGAGAAGATTGGAAAGGATGGTTCATTTCACAAGCGGCTTAACAAAAATGGAATATTCTCTGTTGAAGACTTTCTCCGAATGGTGGTTCGAGATTCTCAAAAGTTACGGAGTATCCTAGGAAGTGGTATGTCAAATAAGATGTGGGAGGCTCTCCTAGAACATGCCAAGACCTGTGTCCTGAGCGGGAAGCTGTATATCTATTATCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCTGATAGCCAGAAGGTAAATGAACCCATGTTTGTTGTGCTTCTAGGATTGTGGGTGTTTCAAGATTTTAGCAGTAGTGTTTATGTAGATACACTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGATGGCAAGTCACTTTTGAGCTCTAAGCAACCTAAGAAGTCCAATGCATCCCGGAATGACTTTCAAGGTGGCCATCTTGATCTTTCTAATACACTAGATCATGGATCACTGCCCCGCATGCCAGTGTCAGTTCAGCCTCAGCAGCCTGTAGTGGATTCAGGACTCTCAGTTGCAGGTAACCACGCTTGTACAATTTTTAGCAAAGCCTCGAGTCCAGGGCATTTAAGTTGGGTTAGCTGGTATAATGATACTACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACTTCTCGACCACAGTTTGACAACTCTCCATTTACTTCTAATGAGTTGATCGGCAATTCTAACCAAGTTCACATCACAAGAAATGATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCTCTCGGTTCTTCTATTCAGGAATCTAATCTGAATCCATTTGACTGGTCAAACAATAGGGACAAGGGAGTTGACGACTTTTTTTCGGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACATTTGTTGCGAATGTTTAGCATGGGAGGGCATGCATCTGTTAACGTCCATGACGAGGGTTTTTCATTCCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGTTCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGGAAAAAAGCAGCTGAGAGACGTGCACAGATTGTCGAGTTGGACGAGGAATAG 2106 42.74 MQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIVEKFLKILIFIESILQEFKCVLLQAFHFVCGSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGQEALSKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKNGIFSVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVNEPMFVVLLGLWVFQDFSSSVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSNASRNDFQGGHLDLSNTLDHGSLPRMPVSVQPQQPVVDSGLSVAGNHACTIFSKASSPGHLSWVSWYNDTTATRYSTQPQFVNSTSRPQFDNSPFTSNELIGNSNQVHITRNDSAFGLALGPPQASSSGFQALGSSIQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQHLLRMFSMGGHASVNVHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21513073 21519535 + Lsi06G011240.1 Lsi06g01124 665854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01124 701 Pfam Calmodulin binding protein-like N-terminal domain 119 266 IPR046831 -
Lsi06g01124 701 Pfam Calmodulin binding protein C-terminal domain 349 392 IPR046829 -
Lsi06g01124 701 MobiDBLite consensus disorder prediction 9 28 - -
Lsi06g01124 701 PANTHER CALMODULIN-BINDING PROTEIN 60 B 412 699 - -
Lsi06g01124 701 PANTHER OS02G0177800 PROTEIN 412 699 IPR012416 GO:0005516
Lsi06g01124 701 PANTHER CALMODULIN-BINDING PROTEIN 60 B 7 392 - -
Lsi06g01124 701 PANTHER OS02G0177800 PROTEIN 7 392 IPR012416 GO:0005516
Lsi06g01124 701 MobiDBLite consensus disorder prediction 1 28 - -
Lsi06g01124 701 Pfam Calmodulin binding protein central domain 278 344 IPR046830 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00191 Lsi-Chr2:1649376 Lsi06g01124 Lsi-Chr6:21513073 2.31E-08 dispersed
Lsi06g01124 Lsi-Chr6:21513073 Lsi06g01525 Lsi-Chr6:25649722 6.67E-89 dispersed
Lsi06g01124 Lsi-Chr6:21513073 Lsi11g00615 Lsi-Chr11:6546482 2.63E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01124 - - cmo:103494282 1147.88