Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01131 ATGGCAGCCCTCCAAATCTATAGTACCGAAACCGAAATCTCTGCGGAGTTTTTGGTAGATCGAATCATCGACCTTTACGAAAGCATCTCGAAGCTCGAAAGCCTAAAGCCATGCAAGAAAGTGAACAACCTCTTCACCAACCTAGTAAACTTGTGCATTTTGCCTTGTTCAATTGATGTCTCAACATTGCCACCAAATTTACAAGCCATTCGTGAGAGGCTCATAGTTCTATGTGGCCAAGCTGAGGGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCAAAACCTCTCAACAATCTCACTCTATTTCCATATTATCAAAACTACATCAAATTAGCCAACCTTGAAAACAAGATTTTGAATGAAAATGGAGTTGTCAATCCAAAGAAGGTAGCTTTTGTTGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGCAACACATGAAGGGCACATATTTCGATAACTACGATGTAGACAACGTGGCAAATGACGTGGCGGGAAAGATCGTGGGGTCAGATGCTGAGGTGGAAGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTAGCGGCTCTTGTGGGAATGAAGAAGGAAGATAAAGTGAAGATTATAAGGCATTTAAGAAAGTATATGAAAGAAGGTGGGATTTTGGTAGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTATACCCTGTGGTTGAAGTTGGAGATTTGGTTGGCTTTGAGATTCTATCTATTTTTCATCCAACTGATGATGTTGTTAATTCGGTTATTTTAGCTCGCAAGACTATGATTATATGA 858 39.98 MAALQIYSTETEISAEFLVDRIIDLYESISKLESLKPCKKVNNLFTNLVNLCILPCSIDVSTLPPNLQAIRERLIVLCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLENKILNENGVVNPKKVAFVGSGPLPLTSIIMAMQHMKGTYFDNYDVDNVANDVAGKIVGSDAEVEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEDKVKIIRHLRKYMKEGGILVVRSAKGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILARKTMII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21563174 21564031 - Lsi06G011310.1 Lsi06g01131 665861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01131 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410|GO:0030418
Lsi06g01131 285 Gene3D Vaccinia Virus protein VP39 13 283 IPR029063 -
Lsi06g01131 285 PANTHER NICOTIANAMINE SYNTHASE 3 1 283 IPR004298 GO:0030410|GO:0030418
Lsi06g01131 285 PANTHER NICOTIANAMINE SYNTHASE 1 283 - -
Lsi06g01131 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 275 IPR029063 -
Lsi06g01131 285 Pfam Nicotianamine synthase protein 15 283 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01131 Lsi-Chr6:21563174 Lsi11g00633 Lsi-Chr11:6689014 6.64E-98 dispersed
Lsi06g01131 Lsi-Chr6:21563174 Lsi06g00055 Lsi-Chr6:447411 4.52E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01131 K05953 - csv:101209464 489.96