Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01133 ATGTCATTGCTATCTGCTTTCTTCTGCTCTCATCTCACTTCACTCACCAAAACTAAATCAACTTCTCTCACTCTTTTTCATTCATTCCTCTATACTTCAACCTCTGCAACTCCACCAATGGCGGCCGCCGACGATCCCTCACTGGAATTCATATTCCGGTCAAAACTCCCGCAAATCCCCATCCCCACCCACCTCCCCCTTCACACATATTGTTTCGAGAAAATCTCCGAATTCAAACACCGTCCATGTCTAATCAACGCCGCCACCGGCGAATCCTACACCTACGGCGAAGTCCAAGAAACATCCCGCCGAGTGGCCGCCGGCCTCCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAGAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCACCTCCTACCTGGGCGCTGCCGCCACCACGGTGAACCCGTTCTTCATGCCGGCGGAAATCGCAAAACAAGCGGCGTCATCCGGCGCCAAGCTGATCATAACCCAAGCCGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAGGAAAACAAGGCAACCATTAAAGTAATATTCATCGACGACGACCCTCCGCTTGAAGGAGGATATCATTTTTCGTCGTTGATTGATGACGTGGCAAAAGTGGAAATGGAAGATGTGAAAATCAGTCCAGACGACGTCGTTGCATTGCCTTATTCATCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGGACTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAAAATCCACACCTCTATATCCGTAGCGACGACGTCGTTTTATGCGTGCTTCCTTTGTTTCACATATATTCCCTGAACACCATCATGATGTGTTCCTTACGAGTGGGAGCTGCGATTTTAATCGTACGAAAATTCGACGTTAATTCACTTGTGGAACTGATTCCCAAATATAGAGTCACCTTTGCGCCGTTTGTGCCTCCGATTGTACTTGCAATTGTCAAGAGTCCAGCCGTGGATCATTCTGACATGTCGTCTTTACGTATGGCATTGTCGGGAGCCGCGCCATTGGGGAAGAATCTCGAAGATGCCTTTAGAACCAAGTTTTCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTTGGGGTCAGTGATGACAATGTCATTGGCGTTTGCAAAAGAGAGGTTCGAGATGAAATCGGGAGGTTGTGGGACGATAATGAGAAATACAGAGATGAAGATAATAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGTCCTCAAATGATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACAAAGACGGATGGCTGCACACCGGCGACATAGGTTTTGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAGGTGGCTCCGGCGGAGTTGGAAGCTCTGCTTATATCCCACGGCCACATCGCTGACGCTGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCTATCAGACGGTTCCAACATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGTTTTCAGGTTTGATATCTCATTACCTTTTGCCTATTGATGGAGATTTTTGCATCGATTTCACGGTTGTGTTTTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCCATTCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAGACAACTTAGAGCTTTGCTCGCAACTAGTATTCCTAATTAG 1827 47.78 MSLLSAFFCSHLTSLTKTKSTSLTLFHSFLYTSTSATPPMAAADDPSLEFIFRSKLPQIPIPTHLPLHTYCFEKISEFKHRPCLINAATGESYTYGEVQETSRRVAAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGTSYLGAAATTVNPFFMPAEIAKQAASSGAKLIITQAAFAEKVKKLSQENKATIKVIFIDDDPPLEGGYHFSSLIDDVAKVEMEDVKISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNTIMMCSLRVGAAILIVRKFDVNSLVELIPKYRVTFAPFVPPIVLAIVKSPAVDHSDMSSLRMALSGAAPLGKNLEDAFRTKFSHVILGQGYGMTELGSVMTMSLAFAKERFEMKSGGCGTIMRNTEMKIINPQTGASLPRNQAGEICIRSPQMMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGHIADAAVIPMKDEVAGEVPVAFIVLSDGSNITEDEIKQYISKQFSGLISHYLLPIDGDFCIDFTVVFYKRINRVFFVDSIPKSPSGKILRRQLRALLATSIPN 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21580207 21588084 - Lsi06G011330.1 Lsi06g01133 665863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01133 608 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 46 549 - -
Lsi06g01133 608 ProSitePatterns Putative AMP-binding domain signature. 231 242 IPR020845 -
Lsi06g01133 608 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 46 549 - -
Lsi06g01133 608 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 568 601 - -
Lsi06g01133 608 CDD 4CL 61 598 - -
Lsi06g01133 608 Gene3D - 43 481 IPR042099 -
Lsi06g01133 608 Pfam AMP-binding enzyme C-terminal domain 496 592 IPR025110 -
Lsi06g01133 608 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 568 601 - -
Lsi06g01133 608 Pfam AMP-binding enzyme 75 487 IPR000873 -
Lsi06g01133 608 Gene3D - 482 605 IPR045851 -
Lsi06g01133 608 SUPERFAMILY Acetyl-CoA synthetase-like 48 604 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01792 Lsi-Chr4:25135071 Lsi06g01133 Lsi-Chr6:21580207 3.36E-98 dispersed
Lsi06g01133 Lsi-Chr6:21580207 Lsi10g00232 Lsi-Chr10:3770732 7.45E-173 dispersed
Lsi02g00484 Lsi-Chr2:4044869 Lsi06g01133 Lsi-Chr6:21580207 1.09E-61 transposed
Lsi04g00112 Lsi-Chr4:1223900 Lsi06g01133 Lsi-Chr6:21580207 5.72E-79 transposed
Lsi04g00690 Lsi-Chr4:6335274 Lsi06g01133 Lsi-Chr6:21580207 2.79E-137 transposed
Lsi05g00421 Lsi-Chr5:5372142 Lsi06g01133 Lsi-Chr6:21580207 1.26E-21 transposed
Lsi05g00678 Lsi-Chr5:9006592 Lsi06g01133 Lsi-Chr6:21580207 1.77E-27 transposed
Lsi09g00272 Lsi-Chr9:2852650 Lsi06g01133 Lsi-Chr6:21580207 7.67E-53 transposed
Lsi09g00842 Lsi-Chr9:9684006 Lsi06g01133 Lsi-Chr6:21580207 5.70E-16 transposed
Lsi11g00723 Lsi-Chr11:7842942 Lsi06g01133 Lsi-Chr6:21580207 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01133 K01904 - csv:101218077 895.575