Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01140 | ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCTTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCTCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGGTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCAGAAATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGACATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAAATCGAGACAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGTGAATCACTCGAATCGTCAGGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGGAATCTCTCTGATAAGGATCGTGTCTTGAAGACTATAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGACCTGAACCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGTGTCCTCTTAAATATCTGCCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGTGAGCGCAGAGATAAAGACAGACTTGTGAAACTCCGTACCCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTTCTAGGACCAGATAACAAAACCTGTCCTGCCGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCACGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAACGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAACAGTCGCGCTGTGTCTGGTTCTCCTGGGAACACCAGCCCAGGAGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAGCCAGGAAGATGCCTGGTATGCCAGGAATGGATAACGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGAGCAGACGGATCTGGTATCCAGCCTGCTGGACGTGGCCAAACACCGTTGGTTGGCAAAGCATCAACATTGAATGCAAGGCTACTGCCCCAGGGTACTGGTGGGCTCATTAATAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGGTTCTACTACTCGTCCTGTTAACTTTGGTCATGGATTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACAGCAGCAACAGTCCTTACACCTGCTGAGAGACCACAGGTTCCAGCTGCATCTTTAAAACAAGATGATCTCAAAAAGAAAACGCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCGATTTCCTTGGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAATGACATTGAAACTGGATGTTTGCTATATGCTTCTGTGCTGGACGATGCAGGCATCGATTTGCCAAAAGCACCCATAAATTTTGGTGACATAATTGGGAAACTTGTTATATCCGGTGGTTTGAATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA | 2415 | 46.09 | MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKGGDSRFEGRERVRYTRNQLLQLREAVEVPDDILKIKRDIEVEIFGEEQSWSRGESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETNRDRDFGGHFDSRQQDVNHSNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTIKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRAVSGSPGNTSPGGFPINRPGFGGMMPGMPGARKMPGMPGMDNDNWEVPRARPVPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLINNKTSALLQGQGAGAGAGGSTTRPVNFGHGLEPSGQVHKPITAATVLTPAERPQVPAASLKQDDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTANDIETGCLLYASVLDDAGIDLPKAPINFGDIIGKLVISGGLNFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEDCRSLAY | 804 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21674868 | 21682032 | + | Lsi06G011400.1 | Lsi06g01140 | 665870 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 112 | 202 | - | - | |
Lsi06g01140 | 804 | Pfam | MIF4G domain | 220 | 444 | IPR003890 | GO:0003723|GO:0005515 | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 480 | 512 | - | - | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Lsi06g01140 | 804 | SUPERFAMILY | ARM repeat | 212 | 446 | IPR016024 | - | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 113 | 130 | - | - | |
Lsi06g01140 | 804 | SMART | if4_15 | 219 | 444 | IPR003890 | GO:0003723|GO:0005515 | |
Lsi06g01140 | 804 | Gene3D | - | 632 | 798 | - | - | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 150 | 173 | - | - | |
Lsi06g01140 | 804 | Pfam | MA3 domain | 639 | 750 | IPR003891 | - | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Lsi06g01140 | 804 | ProSiteProfiles | MI domain profile. | 638 | 760 | IPR003891 | - | |
Lsi06g01140 | 804 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 3 | 802 | IPR045208 | GO:0003743 | |
Lsi06g01140 | 804 | MobiDBLite | consensus disorder prediction | 480 | 494 | - | - | |
Lsi06g01140 | 804 | SMART | ma3_7 | 639 | 751 | IPR003891 | - | |
Lsi06g01140 | 804 | Gene3D | - | 210 | 445 | - | - | |
Lsi06g01140 | 804 | SUPERFAMILY | ARM repeat | 634 | 793 | IPR016024 | - | |
Lsi06g01140 | 804 | PANTHER | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 | 3 | 802 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01347 | Lsi-Chr4:21227360 | Lsi06g01140 | Lsi-Chr6:21674868 | 0 | dispersed | |
Lsi05g01884 | Lsi-Chr5:26003859 | Lsi06g01140 | Lsi-Chr6:21674868 | 8.37E-57 | dispersed | |
Lsi06g01140 | Lsi-Chr6:21674868 | Lsi09g01096 | Lsi-Chr9:17497779 | 1.02E-64 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01140 | K03260 | - | csv:101207520 | 1402.5 |