Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01140 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCTTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCTCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGGTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCAGAAATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGACATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAAATCGAGACAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGTGAATCACTCGAATCGTCAGGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGGAATCTCTCTGATAAGGATCGTGTCTTGAAGACTATAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGACCTGAACCAGAAGCTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGTGTCCTCTTAAATATCTGCCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGTGAGCGCAGAGATAAAGACAGACTTGTGAAACTCCGTACCCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTTCTAGGACCAGATAACAAAACCTGTCCTGCCGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCACGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAAACGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAACAGTCGCGCTGTGTCTGGTTCTCCTGGGAACACCAGCCCAGGAGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAGCCAGGAAGATGCCTGGTATGCCAGGAATGGATAACGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGAGCAGACGGATCTGGTATCCAGCCTGCTGGACGTGGCCAAACACCGTTGGTTGGCAAAGCATCAACATTGAATGCAAGGCTACTGCCCCAGGGTACTGGTGGGCTCATTAATAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGGTTCTACTACTCGTCCTGTTAACTTTGGTCATGGATTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACAGCAGCAACAGTCCTTACACCTGCTGAGAGACCACAGGTTCCAGCTGCATCTTTAAAACAAGATGATCTCAAAAAGAAAACGCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCGATTTCCTTGGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAATGACATTGAAACTGGATGTTTGCTATATGCTTCTGTGCTGGACGATGCAGGCATCGATTTGCCAAAAGCACCCATAAATTTTGGTGACATAATTGGGAAACTTGTTATATCCGGTGGTTTGAATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCGATATCGAGGACTGTCGAAGTCTGGCATATTAA 2415 46.09 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKGGDSRFEGRERVRYTRNQLLQLREAVEVPDDILKIKRDIEVEIFGEEQSWSRGESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETNRDRDFGGHFDSRQQDVNHSNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTIKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRAVSGSPGNTSPGGFPINRPGFGGMMPGMPGARKMPGMPGMDNDNWEVPRARPVPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLINNKTSALLQGQGAGAGAGGSTTRPVNFGHGLEPSGQVHKPITAATVLTPAERPQVPAASLKQDDLKKKTLSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTANDIETGCLLYASVLDDAGIDLPKAPINFGDIIGKLVISGGLNFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEDCRSLAY 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21674868 21682032 + Lsi06G011400.1 Lsi06g01140 665870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01140 804 MobiDBLite consensus disorder prediction 112 202 - -
Lsi06g01140 804 Pfam MIF4G domain 220 444 IPR003890 GO:0003723|GO:0005515
Lsi06g01140 804 MobiDBLite consensus disorder prediction 480 512 - -
Lsi06g01140 804 MobiDBLite consensus disorder prediction 174 194 - -
Lsi06g01140 804 MobiDBLite consensus disorder prediction 1 43 - -
Lsi06g01140 804 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Lsi06g01140 804 MobiDBLite consensus disorder prediction 113 130 - -
Lsi06g01140 804 SMART if4_15 219 444 IPR003890 GO:0003723|GO:0005515
Lsi06g01140 804 Gene3D - 632 798 - -
Lsi06g01140 804 MobiDBLite consensus disorder prediction 150 173 - -
Lsi06g01140 804 Pfam MA3 domain 639 750 IPR003891 -
Lsi06g01140 804 MobiDBLite consensus disorder prediction 25 43 - -
Lsi06g01140 804 ProSiteProfiles MI domain profile. 638 760 IPR003891 -
Lsi06g01140 804 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 802 IPR045208 GO:0003743
Lsi06g01140 804 MobiDBLite consensus disorder prediction 480 494 - -
Lsi06g01140 804 SMART ma3_7 639 751 IPR003891 -
Lsi06g01140 804 Gene3D - 210 445 - -
Lsi06g01140 804 SUPERFAMILY ARM repeat 634 793 IPR016024 -
Lsi06g01140 804 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01347 Lsi-Chr4:21227360 Lsi06g01140 Lsi-Chr6:21674868 0 dispersed
Lsi05g01884 Lsi-Chr5:26003859 Lsi06g01140 Lsi-Chr6:21674868 8.37E-57 dispersed
Lsi06g01140 Lsi-Chr6:21674868 Lsi09g01096 Lsi-Chr9:17497779 1.02E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01140 K03260 - csv:101207520 1402.5