Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01156 | ATGACACTGGGGAACGACGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGAAAGCACGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCCGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATATTAAGACAATGGAATTAGTCACTGTATTAGAGTCAAAAGAGAAGCCTCCATGTGGCTATAAACGTCGTGAAAACAAAACCGTCAAACCAAAAGAATCCAATGGTGATGAAACCATTGAACAAGATCCGACGGCTTTGCAACAGTTGGTGGTGACTTTACTCTCTTTTGGGAGAGGAGAATCGGCCATGGCGGAGCGGGAAAGCTTCGGAACTGACGAACTCGGAAGCTCTAAGGCGGCTACTGCAGGGCAAGAGGATGATGAAGAAGAGATGGAAGATTCGGAGGATGAATCGGAGGTGGAGTTGGAAGAAGAAGGAGGAGGAGTGAGTGAGTTGCAACCGACTGAGTTGAGGACCGGTTCGTCGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCTAATCAGTCCTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGGTTCATCTTCCCGCAATGAGCCAATGGCTGTTGAAGCAACCCAGACAGATAAGGTTCAAGAACAAAGCCAGCTTCAGGTGTCAACATGTAAAGGACCTGGTTCAGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAAATGCTTCATCTGTTCCCAATGTAAGGGCACCTGCTTCTGACGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATCGAATGTTGTGATCACTCAGGCCATATAACAGAAACTGTTTACAAGAGCCAACATAGTCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCAAAAGAACCTTTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAATACTCAAATGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGATGAACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAACTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGACGTGGGAATCTCGGGTGACGGATATAGATGGCGCAAATATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGCTATTTATATAGTCTTACTGTTGATTTGATGGAAGATAAGACATGGTTATTATTATCAGCTTTTACTTTGGTTAAGTGGGATTTTCTTCAGTTATGTTATGTTATTTGTGTTTATCGATTTAACTTATATCTAGTGAAAAAAATCAATCAAATTTCATCGTATTGCTATCATAAAGGAAACAAACTGTTTCCAATTAATTCCTATATCCCCCCATATTCTGAAGCCTTGAATTGTCTGAATTTGATGAACTACTACCGATGTACTTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCAGTGGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCATGACATGCCTGTACCAAAGAAACGACACGGTCCACCAAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCAATGAGCAATACACAACCGAAGAAAACCGACGTGGTTGAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA | 2478 | 44.03 | MTLGNDGAAMSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKNIKTMELVTVLESKEKPPCGYKRRENKTVKPKESNGDETIEQDPTALQQLVVTLLSFGRGESAMAERESFGTDELGSSKAATAGQEDDEEEMEDSEDESEVELEEEGGGVSELQPTELRTGSSVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQGSSSRNEPMAVEATQTDKVQEQSQLQVSTCKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKNASSVPNVRAPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHITETVYKSQHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTPSKEPLRETAIVLERKRQYSNDSDGNDEFKIKDENDDEPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPSYLYSLTVDLMEDKTWLLLSAFTLVKWDFLQLCYVICVYRFNLYLVKKINQISSYCYHKGNKLFPINSYIPPYSEALNCLNLMNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC | 825 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21755679 | 21767685 | - | Lsi06G011560.1 | Lsi06g01156 | 665886 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 231 | 452 | - | - | |
Lsi06g01156 | 825 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 94 | 163 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Lsi06g01156 | 825 | ProSiteProfiles | WRKY domain profile. | 432 | 490 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 254 | 275 | - | - | |
Lsi06g01156 | 825 | Gene3D | WRKY domain | 417 | 491 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | Gene3D | WRKY domain | 663 | 747 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 543 | 573 | - | - | |
Lsi06g01156 | 825 | CDD | S1_eIF5A | 95 | 165 | - | - | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 185 | 212 | - | - | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 185 | 207 | - | - | |
Lsi06g01156 | 825 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 59 | 66 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Lsi06g01156 | 825 | Gene3D | WRKY domain | 592 | 637 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 397 | 412 | - | - | |
Lsi06g01156 | 825 | Gene3D | - | 10 | 94 | IPR014722 | - | |
Lsi06g01156 | 825 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 27 | 162 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 283 | 396 | - | - | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi06g01156 | 825 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 708 | 823 | IPR044810 | GO:0003700 | |
Lsi06g01156 | 825 | SUPERFAMILY | WRKY DNA-binding domain | 704 | 746 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | SMART | eIF_5a_2 | 94 | 163 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 413 | 429 | - | - | |
Lsi06g01156 | 825 | Gene3D | - | 95 | 168 | IPR012340 | - | |
Lsi06g01156 | 825 | ProSiteProfiles | WRKY domain profile. | 599 | 746 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | SUPERFAMILY | Nucleic acid-binding proteins | 95 | 165 | IPR012340 | - | |
Lsi06g01156 | 825 | SMART | WRKY_cls | 431 | 489 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | SMART | WRKY_cls | 604 | 745 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 708 | 823 | - | - | |
Lsi06g01156 | 825 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 254 | 629 | - | - | |
Lsi06g01156 | 825 | SUPERFAMILY | WRKY DNA-binding domain | 430 | 490 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | SUPERFAMILY | Translation proteins SH3-like domain | 24 | 102 | IPR008991 | - | |
Lsi06g01156 | 825 | Coils | Coil | 253 | 273 | - | - | |
Lsi06g01156 | 825 | Pfam | WRKY DNA -binding domain | 606 | 628 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | Pfam | WRKY DNA -binding domain | 433 | 487 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | Pfam | WRKY DNA -binding domain | 707 | 743 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 254 | 629 | IPR044810 | GO:0003700 | |
Lsi06g01156 | 825 | SUPERFAMILY | WRKY DNA-binding domain | 600 | 628 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01156 | 825 | MobiDBLite | consensus disorder prediction | 543 | 591 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g01336 | Lsi-Chr4:21151148 | Lsi06g01156 | Lsi-Chr6:21755679 | 1.00E-105 | dispersed | |
Lsi06g01156 | Lsi-Chr6:21755679 | Lsi08g01248 | Lsi-Chr8:20955079 | 9.43E-100 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25513 | PF01287 | eIF-5a | 4.50E-27 | CL0021 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01156 | - | - | bhj:120071353 | 662.144 |