Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01156 ATGACACTGGGGAACGACGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTCCCTCAGCAAGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTTGTTGAAGTTTCGACTTCAAAAACTGGAAAGCACGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCATAACTGTGATGTTCCCCATGTTAATCGCACTGACTATCAGCTGATTGATATATCCGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAGGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATATTAAGACAATGGAATTAGTCACTGTATTAGAGTCAAAAGAGAAGCCTCCATGTGGCTATAAACGTCGTGAAAACAAAACCGTCAAACCAAAAGAATCCAATGGTGATGAAACCATTGAACAAGATCCGACGGCTTTGCAACAGTTGGTGGTGACTTTACTCTCTTTTGGGAGAGGAGAATCGGCCATGGCGGAGCGGGAAAGCTTCGGAACTGACGAACTCGGAAGCTCTAAGGCGGCTACTGCAGGGCAAGAGGATGATGAAGAAGAGATGGAAGATTCGGAGGATGAATCGGAGGTGGAGTTGGAAGAAGAAGGAGGAGGAGTGAGTGAGTTGCAACCGACTGAGTTGAGGACCGGTTCGTCGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCTAATCAGTCCTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGGTTCATCTTCCCGCAATGAGCCAATGGCTGTTGAAGCAACCCAGACAGATAAGGTTCAAGAACAAAGCCAGCTTCAGGTGTCAACATGTAAAGGACCTGGTTCAGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAAATGCTTCATCTGTTCCCAATGTAAGGGCACCTGCTTCTGACGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATCGAATGTTGTGATCACTCAGGCCATATAACAGAAACTGTTTACAAGAGCCAACATAGTCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCAAAAGAACCTTTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAATACTCAAATGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGATGAACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAACTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGACGTGGGAATCTCGGGTGACGGATATAGATGGCGCAAATATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGCTATTTATATAGTCTTACTGTTGATTTGATGGAAGATAAGACATGGTTATTATTATCAGCTTTTACTTTGGTTAAGTGGGATTTTCTTCAGTTATGTTATGTTATTTGTGTTTATCGATTTAACTTATATCTAGTGAAAAAAATCAATCAAATTTCATCGTATTGCTATCATAAAGGAAACAAACTGTTTCCAATTAATTCCTATATCCCCCCATATTCTGAAGCCTTGAATTGTCTGAATTTGATGAACTACTACCGATGTACTTCTGCTGGGTGTCCAGTCCGTAAGCATATCGAATCAGCAGTGGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCATGACATGCCTGTACCAAAGAAACGACACGGTCCACCAAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCAATGAGCAATACACAACCGAAGAAAACCGACGTGGTTGAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 2478 44.03 MTLGNDGAAMSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKNIKTMELVTVLESKEKPPCGYKRRENKTVKPKESNGDETIEQDPTALQQLVVTLLSFGRGESAMAERESFGTDELGSSKAATAGQEDDEEEMEDSEDESEVELEEEGGGVSELQPTELRTGSSVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQGSSSRNEPMAVEATQTDKVQEQSQLQVSTCKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKNASSVPNVRAPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHITETVYKSQHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTPSKEPLRETAIVLERKRQYSNDSDGNDEFKIKDENDDEPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPSYLYSLTVDLMEDKTWLLLSAFTLVKWDFLQLCYVICVYRFNLYLVKKINQISSYCYHKGNKLFPINSYIPPYSEALNCLNLMNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21755679 21767685 - Lsi06G011560.1 Lsi06g01156 665886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01156 825 MobiDBLite consensus disorder prediction 231 452 - -
Lsi06g01156 825 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 94 163 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi06g01156 825 ProSiteProfiles WRKY domain profile. 432 490 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 MobiDBLite consensus disorder prediction 254 275 - -
Lsi06g01156 825 Gene3D WRKY domain 417 491 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 Gene3D WRKY domain 663 747 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 MobiDBLite consensus disorder prediction 543 573 - -
Lsi06g01156 825 CDD S1_eIF5A 95 165 - -
Lsi06g01156 825 MobiDBLite consensus disorder prediction 185 212 - -
Lsi06g01156 825 MobiDBLite consensus disorder prediction 185 207 - -
Lsi06g01156 825 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 59 66 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi06g01156 825 Gene3D WRKY domain 592 637 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 MobiDBLite consensus disorder prediction 397 412 - -
Lsi06g01156 825 Gene3D - 10 94 IPR014722 -
Lsi06g01156 825 TIGRFAM eIF_5A: translation elongation factor IF5A 27 162 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lsi06g01156 825 MobiDBLite consensus disorder prediction 283 396 - -
Lsi06g01156 825 MobiDBLite consensus disorder prediction 1 30 - -
Lsi06g01156 825 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 708 823 IPR044810 GO:0003700
Lsi06g01156 825 SUPERFAMILY WRKY DNA-binding domain 704 746 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 SMART eIF_5a_2 94 163 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lsi06g01156 825 MobiDBLite consensus disorder prediction 413 429 - -
Lsi06g01156 825 Gene3D - 95 168 IPR012340 -
Lsi06g01156 825 ProSiteProfiles WRKY domain profile. 599 746 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 SUPERFAMILY Nucleic acid-binding proteins 95 165 IPR012340 -
Lsi06g01156 825 SMART WRKY_cls 431 489 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 SMART WRKY_cls 604 745 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 708 823 - -
Lsi06g01156 825 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 254 629 - -
Lsi06g01156 825 SUPERFAMILY WRKY DNA-binding domain 430 490 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 SUPERFAMILY Translation proteins SH3-like domain 24 102 IPR008991 -
Lsi06g01156 825 Coils Coil 253 273 - -
Lsi06g01156 825 Pfam WRKY DNA -binding domain 606 628 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 Pfam WRKY DNA -binding domain 433 487 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 Pfam WRKY DNA -binding domain 707 743 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 254 629 IPR044810 GO:0003700
Lsi06g01156 825 SUPERFAMILY WRKY DNA-binding domain 600 628 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01156 825 MobiDBLite consensus disorder prediction 543 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01336 Lsi-Chr4:21151148 Lsi06g01156 Lsi-Chr6:21755679 1.00E-105 dispersed
Lsi06g01156 Lsi-Chr6:21755679 Lsi08g01248 Lsi-Chr8:20955079 9.43E-100 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25513 PF01287 eIF-5a 4.50E-27 CL0021 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01156 - - bhj:120071353 662.144