Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01160 ATGGTAGTTTTTGATTGCTGTTTTACGACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTTCGAGAACATTTAACAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCGCAACAGTATGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGGCAGGCACCTCGTGAGCTTTTGCAGTTTTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATACATCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGCTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTATATTCAACTCCCAAAAGAAGCAAAAATGTCCGGACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGTATCACCTTGGCTGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATACTCAACCGTGAAGAGATCGACACTTTGTGGAATTCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTTGTACTGTGGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTTCATTGTACAAGTCCCAGAACACTTCCGCAAAAATTCACATTGGAGAACAAAATTAAAATCCTAGAGAAGGAAGAATCTACTCCAACATCTAATTTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTCAGAGTCTTTCCCACTTGCCTATGACATTTTACAAGATTCGCCAAAGTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGACGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCAAATGCAACATTGGCTTCTTCTCTTGCACCTGATTCTCTTCAGACTAAAAGTTTCTACACAGAAACAACCATACCACCACCTCCTCCTCTCCCCCAACTTTCCACAGGTATTTCTGCTGCAAATTCTCTAGCTCCTCCTCCCCCTACTCCAACTGCATCACCACATCCGTCTAGTAACTTTTCAACTCTAAGACCAGATAAATCTTCACTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACTATTAGCCCTCCCCTGTCAGTAACCTCTGCAATTAGTTCCTCAATACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAATTAAAGCTTCTCCGCCAACACCCCCTCCATTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTCAGTGCCTCAACCACCACCACCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCTCCTCCACCTCCATCGGCCATAACTAAAATTTCCTCTCCAGTGCCTCCACCACCACCTCTTCCTACGACGTTCAAACAGGTTGAAAGTACTTCATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCTAGACAGGGAAGTACTTCAACATCTCCATCTGTTTCCCATCCTCCACCCCCGCCTTCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAATGGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAAGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGGTATAAAGGGACGGAGTTTGTCACGCACTATAAGCTCAAGAACACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAACAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATCAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGATGCTCGGAAAATGTGAACAGGAAAAAGTTCGGTTCTTCTTAGGGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGATAAAAAGTTCAGTGAAGTTGAAAAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACGTCGGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCCAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCGCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGTGAAAAATCAAAGACGGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACACTGGCGGATCACGCTTTATCCTGTTGTTGAATGTGCTGAACAGGCTGCTTGTATCGAAACTGAACTAA 3768 42.78 MVVFDCCFTTDTWKEENYEVYLGGIVAQLREHLTDASFLVFNFRRLELQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYIARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECITLADDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNSKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLHCTSPRTLPQKFTLENKIKILEKEESTPTSNFSPDAAKTEQNYESDSVFQQVPQSSESFPLAYDILQDSPKSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNATLASSLAPDSLQTKSFYTETTIPPPPPLPQLSTGISAANSLAPPPPTPTASPHPSSNFSTLRPDKSSLTEEIEIYSKDQNQLSTISPPLSVTSAISSSIQPPPPPPPPPPSTPPLKDTIAVRIKASPPTPPPFPSTFASHPTIASSVPQPPPPPPTSTVNRKISSPIPSPPPPPPPPPSAITKISSPVPPPPPLPTTFKQVESTSSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVSHPPPPPSSTTSSSSPVPSAPPPPTLSGRGTSKSGEWCPGSLLGNGSSKSSSPVPPSSSPSGIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQEKVRFFLGLMQVPRVESKLRVFSFKIQFSSQIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNTGGSRFILLLNVLNRLLVSKLN 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21828406 21839200 + Lsi06G011600.1 Lsi06g01160 665890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01160 1255 Gene3D Protein tyrosine phosphatase superfamily 1 177 IPR029021 -
Lsi06g01160 1255 Gene3D - 178 318 - -
Lsi06g01160 1255 SUPERFAMILY Formin homology 2 domain (FH2 domain) 900 1203 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 645 670 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 540 556 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 604 620 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 519 531 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 626 643 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 458 477 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 647 699 - -
Lsi06g01160 1255 Pfam C2 domain of PTEN tumour-suppressor protein 177 315 IPR014020 -
Lsi06g01160 1255 SMART PTEN_C2_2 175 315 IPR014020 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 795 829 - -
Lsi06g01160 1255 Pfam Formin Homology 2 Domain 833 1184 IPR015425 -
Lsi06g01160 1255 Coils Coil 1184 1204 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 731 745 - -
Lsi06g01160 1255 ProSiteProfiles C2 tensin-type domain profile. 177 316 IPR014020 -
Lsi06g01160 1255 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 34 164 IPR029021 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 1202 1221 - -
Lsi06g01160 1255 PANTHER FORMIN-J 2 1208 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 519 566 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 415 442 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 416 442 - -
Lsi06g01160 1255 SMART it6_source 520 1254 IPR015425 -
Lsi06g01160 1255 Gene3D Formin, FH2 domain 825 1194 IPR042201 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 753 779 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 600 617 - -
Lsi06g01160 1255 ProSiteProfiles Formin homology-2 (FH2) domain profile. 826 1209 IPR015425 -
Lsi06g01160 1255 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 179 316 IPR035892 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 594 829 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01160 - - - csv:101221713 1897.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02074 Lsi-Chr4:27894458 Lsi06g01160 Lsi-Chr6:21828406 1.96E-159 dispersed
Lsi06g01160 Lsi-Chr6:21828406 Lsi06g01444 Lsi-Chr6:24992843 1.36E-18 dispersed
Lsi06g01160 Lsi-Chr6:21828406 Lsi02g00091 Lsi-Chr2:754442 4.30E-131 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01160 Lsi_Chr06 FPKM 1.981481 1.445372 9.613175 7.816509 6.646821 6.729946 7.351765 13.67022 14.488225 14.679387
Lsi06g01160 Lsi_Chr00 FPKM 1.138202 0.0 0.0 0.882205 0.0 0.823252 0.975865 2.083284 2.267589 3.080489