Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01160 ATGGTAGTTTTTGATTGCTGTTTTACGACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTTCGAGAACATTTAACAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCGCAACAGTATGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCACTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGGCAGGCACCTCGTGAGCTTTTGCAGTTTTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTGCAATACATCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGCTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTATATTCAACTCCCAAAAGAAGCAAAAATGTCCGGACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGTATCACCTTGGCTGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATACTCAACCGTGAAGAGATCGACACTTTGTGGAATTCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTTGTACTGTGGCAAACGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTTCATTGTACAAGTCCCAGAACACTTCCGCAAAAATTCACATTGGAGAACAAAATTAAAATCCTAGAGAAGGAAGAATCTACTCCAACATCTAATTTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTCAGAGTCTTTCCCACTTGCCTATGACATTTTACAAGATTCGCCAAAGTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGACGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCAAATGCAACATTGGCTTCTTCTCTTGCACCTGATTCTCTTCAGACTAAAAGTTTCTACACAGAAACAACCATACCACCACCTCCTCCTCTCCCCCAACTTTCCACAGGTATTTCTGCTGCAAATTCTCTAGCTCCTCCTCCCCCTACTCCAACTGCATCACCACATCCGTCTAGTAACTTTTCAACTCTAAGACCAGATAAATCTTCACTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACTATTAGCCCTCCCCTGTCAGTAACCTCTGCAATTAGTTCCTCAATACAGCCTCCTCCACCACCTCCTCCACCACCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAATTAAAGCTTCTCCGCCAACACCCCCTCCATTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTCAGTGCCTCAACCACCACCACCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCTCCTCCACCTCCATCGGCCATAACTAAAATTTCCTCTCCAGTGCCTCCACCACCACCTCTTCCTACGACGTTCAAACAGGTTGAAAGTACTTCATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCTAGACAGGGAAGTACTTCAACATCTCCATCTGTTTCCCATCCTCCACCCCCGCCTTCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACTTCAAAATCTGGTGAATGGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAAGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGGTATAAAGGGACGGAGTTTGTCACGCACTATAAGCTCAAGAACACATATAACTAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAACAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATCAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGATGCTCGGAAAATGTGAACAGGAAAAAGTTCGGTTCTTCTTAGGGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCAGCTCTCAGATAAAAAGTTCAGTGAAGTTGAAAAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACGTCGGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCCAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCGCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGTGAAAAATCAAAGACGGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACACTGGCGGATCACGCTTTATCCTGTTGTTGAATGTGCTGAACAGGCTGCTTGTATCGAAACTGAACTAA 3768 42.78 MVVFDCCFTTDTWKEENYEVYLGGIVAQLREHLTDASFLVFNFRRLELQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYIARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECITLADDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNSKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLHCTSPRTLPQKFTLENKIKILEKEESTPTSNFSPDAAKTEQNYESDSVFQQVPQSSESFPLAYDILQDSPKSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNATLASSLAPDSLQTKSFYTETTIPPPPPLPQLSTGISAANSLAPPPPTPTASPHPSSNFSTLRPDKSSLTEEIEIYSKDQNQLSTISPPLSVTSAISSSIQPPPPPPPPPPSTPPLKDTIAVRIKASPPTPPPFPSTFASHPTIASSVPQPPPPPPTSTVNRKISSPIPSPPPPPPPPPSAITKISSPVPPPPPLPTTFKQVESTSSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVSHPPPPPSSTTSSSSPVPSAPPPPTLSGRGTSKSGEWCPGSLLGNGSSKSSSPVPPSSSPSGIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEMLGKCEQEKVRFFLGLMQVPRVESKLRVFSFKIQFSSQIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNTGGSRFILLLNVLNRLLVSKLN 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21828406 21839200 + Lsi06G011600.1 Lsi06g01160 665890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01160 1255 Gene3D Protein tyrosine phosphatase superfamily 1 177 IPR029021 -
Lsi06g01160 1255 Gene3D - 178 318 - -
Lsi06g01160 1255 SUPERFAMILY Formin homology 2 domain (FH2 domain) 900 1203 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 645 670 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 540 556 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 604 620 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 519 531 - -
Lsi06g01160 1255 PRINTS Proline rich extensin signature 626 643 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 458 477 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 647 699 - -
Lsi06g01160 1255 Pfam C2 domain of PTEN tumour-suppressor protein 177 315 IPR014020 -
Lsi06g01160 1255 SMART PTEN_C2_2 175 315 IPR014020 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 795 829 - -
Lsi06g01160 1255 Pfam Formin Homology 2 Domain 833 1184 IPR015425 -
Lsi06g01160 1255 Coils Coil 1184 1204 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 731 745 - -
Lsi06g01160 1255 ProSiteProfiles C2 tensin-type domain profile. 177 316 IPR014020 -
Lsi06g01160 1255 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 34 164 IPR029021 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 1202 1221 - -
Lsi06g01160 1255 PANTHER FORMIN-J 2 1208 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 519 566 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 415 442 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 416 442 - -
Lsi06g01160 1255 SMART it6_source 520 1254 IPR015425 -
Lsi06g01160 1255 Gene3D Formin, FH2 domain 825 1194 IPR042201 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 753 779 - -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 600 617 - -
Lsi06g01160 1255 ProSiteProfiles Formin homology-2 (FH2) domain profile. 826 1209 IPR015425 -
Lsi06g01160 1255 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 179 316 IPR035892 -
Lsi06g01160 1255 MobiDBLite consensus disorder prediction 594 829 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02074 Lsi-Chr4:27894458 Lsi06g01160 Lsi-Chr6:21828406 1.96E-159 dispersed
Lsi06g01160 Lsi-Chr6:21828406 Lsi06g01444 Lsi-Chr6:24992843 1.36E-18 dispersed
Lsi06g01160 Lsi-Chr6:21828406 Lsi02g00091 Lsi-Chr2:754442 4.30E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01160 - - csv:101221713 1897.48