Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01165 ATGGCGGAAAAGGACAGAGACAGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTCGTTGGGAAGGAGAAGGTCATAAAAGTAGGAATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTTGAGCTTCATGAAGTTATGGCGAGCAAATCAAAGATCTATTTCTCTATGGAGCTTGTTCGAGGCGGGGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTACCATCGGGACCTCAAACCGGAGAATCTTCTACTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCGGAAGTTATCGGGAAGAAGGGATACAACGGCGCGAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTTCAGGACGATAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTCGATCCAAACCCGAGCACCAGAATTACAACTTCGAAGATCATGGAATCGTCCTGGTTCAGGAAATCTATACCAAGGACTGTAGTGACTAAAGAGGAGCAGGAATTCAACGAGAGCACCGAGAAATTGAAGCAATCTGAAACGTTGAATGCATTCCATATAATTTCTTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAGGGAAGAGAAAGAAGAGCTAAGATTTGCGACGACGAGGCCGGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAAGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGTGTGTGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAAATATTCGCCGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAACCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCACGCCGGCTTGA 1293 48.49 MAEKDRDSNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFSMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFRKSIPRTVVTKEEQEFNESTEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQVCGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSTPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21900407 21901699 + Lsi06G011650.1 Lsi06g01165 665895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01165 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
Lsi06g01165 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Lsi06g01165 430 Gene3D Transferase(Phosphotransferase) domain 1 99 276 - -
Lsi06g01165 430 CDD STKc_SnRK3 16 270 - -
Lsi06g01165 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Lsi06g01165 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Lsi06g01165 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01165 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lsi06g01165 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Lsi06g01165 430 PANTHER - 8 428 - -
Lsi06g01165 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Lsi06g01165 430 CDD CIPK_C 301 416 - -
Lsi06g01165 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01165 430 Coils Coil 280 300 - -
Lsi06g01165 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01165 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02076 Lsi-Chr4:27926843 Lsi06g01165 Lsi-Chr6:21900407 1.44E-179 dispersed
Lsi06g01165 Lsi-Chr6:21900407 Lsi11g00402 Lsi-Chr11:4196553 0 dispersed
Lsi06g01165 Lsi-Chr6:21900407 Lsi02g00815 Lsi-Chr2:7601919 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83735 PF00069 Pkinase 2.70E-73 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01165 - K07198 csv:101211847 822.772