Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01166 ATGAAACAGGAGTTGTCAAGTACAATTTCAAAAACCAGGGCGGAAGCAATTGGAGAAGCTTTAGATTCAAGCTGCATTACTTGTCCATTCCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGCGTTGTGCCTCAGCAGAATGGTCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACGCTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGAACCAAATTTGCCGAGTATTTGAGGGATTGTTCCGAAAGCGCACAAACATCAGCCAGTCCCTCATCAGAAAAGGTGCATAACAATGGAGGGATGTCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCTGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATGTGGAACGTGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGTCAGAGCTATGTTTTTACACGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAAAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACAACAGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGCGAATTGCAGCAGCTCGATTTGAGGCATGAAGAAGTTGAGGAATCGGTCTCGCCTAAGCACGTGGACGATGAACTAAAAGATGATCATGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1023 41.64 MKQELSSTISKTRAEAIGEALDSSCITCPFPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYATEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGMSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENVERADDDRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSKTTFCVVDVKNRDNSGSLVENETTCSELQQLDLRHEEVEESVSPKHVDDELKDDHEVKGFKLFGVHIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21911166 21912188 - Lsi06G011660.1 Lsi06g01166 665896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01166 340 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Lsi06g01166 340 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Lsi06g01166 340 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
Lsi06g01166 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 339 IPR044800 GO:0003700
Lsi06g01166 340 ProSiteProfiles B3 DNA-binding domain profile. 167 284 IPR003340 GO:0003677
Lsi06g01166 340 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Lsi06g01166 340 CDD B3_DNA 166 278 IPR003340 GO:0003677
Lsi06g01166 340 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Lsi06g01166 340 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Lsi06g01166 340 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Lsi06g01166 340 PANTHER DNA-BINDING PROTEIN RAV1 1 339 - -
Lsi06g01166 340 SMART B3_2 167 282 IPR003340 GO:0003677
Lsi06g01166 340 Gene3D - 162 290 IPR015300 -
Lsi06g01166 340 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00469 Lsi-Chr6:5435377 Lsi06g01166 Lsi-Chr6:21911166 6.77E-108 dispersed
Lsi06g01166 Lsi-Chr6:21911166 Lsi09g01022 Lsi-Chr9:14369298 1.30E-53 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25514 PF02362 B3 1.80E-24 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01166 K09287 - csv:101212246 625.165