Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01169 ATGCAGCCCTGTAGCAGAGAAATGCAAACTCTCAACTCTCTCTTAAACCACTCCCAAATCTCCCTCCAGGACCTCCACCCCGACCCCCACCACCATCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCACCGTCTCACCTCCACCATTTCGATCCCGCCGCCGCTGCTTCCCATGACGACTTCCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCCAACCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCACCAATAAGCCCTCCAGAGATATCTCTGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGCTCTGCCGGAAATGGGGTAGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCCGACTCCCAAAACGACGTCGTCGATGGATCCTGCTTCCGTCCACCGAACTCGGGAGGTTCTCTTCAATCGCATAGCTTCGGTGCTCCGGGAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTCGCTGACGTCTCCTCTGAGGGTGGTGGTGAGTGTATGCAAGGAAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGTGGCGGAAACCAAACGGCGTCGTCGAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCAAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGGAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCGATATCCACGTCCACGTGTCACTCTAGGAATCCCTTGATGAACGGCGGCGGCGGAGGTAGTCAGCTTCCTGTGATGGGATCGAACGGCGAAGGACCATCGTCCCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGCATGGGGAATGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA 1269 55.63 MQPCSREMQTLNSLLNHSQISLQDLHPDPHHHHNHHLNPPPPQIPPSHLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLQPSNPKSPWDLNPTNKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADSQNDVVDGSCFRPPNSGGSLQSHSFGAPGNVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGSQLPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21956891 21960263 - Lsi06G011690.1 Lsi06g01169 665899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01169 422 MobiDBLite consensus disorder prediction 301 327 - -
Lsi06g01169 422 Gene3D - 208 271 IPR036638 GO:0046983
Lsi06g01169 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 375 - -
Lsi06g01169 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 274 IPR036638 GO:0046983
Lsi06g01169 422 MobiDBLite consensus disorder prediction 165 209 - -
Lsi06g01169 422 MobiDBLite consensus disorder prediction 372 422 - -
Lsi06g01169 422 MobiDBLite consensus disorder prediction 291 327 - -
Lsi06g01169 422 MobiDBLite consensus disorder prediction 23 51 - -
Lsi06g01169 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 214 263 IPR011598 GO:0046983
Lsi06g01169 422 MobiDBLite consensus disorder prediction 165 217 - -
Lsi06g01169 422 SMART finulus 220 269 IPR011598 GO:0046983
Lsi06g01169 422 MobiDBLite consensus disorder prediction 74 95 - -
Lsi06g01169 422 MobiDBLite consensus disorder prediction 74 105 - -
Lsi06g01169 422 MobiDBLite consensus disorder prediction 387 422 - -
Lsi06g01169 422 Pfam Helix-loop-helix DNA-binding domain 219 264 IPR011598 GO:0046983
Lsi06g01169 422 PANTHER TRANSCRIPTION FACTOR BHLH69 51 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00573 Lsi-Chr3:7014859 Lsi06g01169 Lsi-Chr6:21956891 1.03E-21 dispersed
Lsi04g01492 Lsi-Chr4:22609862 Lsi06g01169 Lsi-Chr6:21956891 1.15E-22 dispersed
Lsi05g00923 Lsi-Chr5:16390963 Lsi06g01169 Lsi-Chr6:21956891 2.74E-16 dispersed
Lsi06g00191 Lsi-Chr6:2074144 Lsi06g01169 Lsi-Chr6:21956891 1.84E-65 dispersed
Lsi06g00513 Lsi-Chr6:6183825 Lsi06g01169 Lsi-Chr6:21956891 2.71E-10 dispersed
Lsi06g01169 Lsi-Chr6:21956891 Lsi11g00401 Lsi-Chr11:4157224 4.07E-109 dispersed
Lsi08g01523 Lsi-Chr8:23282865 Lsi06g01169 Lsi-Chr6:21956891 1.58E-21 dispersed
Lsi06g01169 Lsi-Chr6:21956891 Lsi04g01455 Lsi-Chr4:22304152 2.31E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25515 PF00010 HLH 1.60E-09 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01169 - - csv:101211609 714.531