Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01180 ATGAATAACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCCTCTCCAAATTGGCTTGCCTTTTCTCTCTCTAATAATCCTAACTCTCTTTCTCTATTCCATCATCATCCTAATTCTACCGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCTACTCCTCCTCCTCCTCCGCCACCGCCATCGCCGCCTCCCTTTCACTTTTCTACCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTACGTGAACCACCAACCACCCATTTCCCTGAACAGCACTTCCACCATCTCCACGCGCCACCGCCACTGCCGCTGCCACCGACTCAATCTGATACTTCACCGCCCCCACCACCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCCATCTACCGCGGTGTTACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGATAATAGTTGCAGAAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCTTCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGGAATAAAGATCTTTATCTTGGAACATTCAGCACTCAAGAAGAAGCAGCGGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCGGTTACAAACTTCGACATCAGTCGTTATGACGTGAAGAGCATTGCAAACAGCAACCTCCCGATCGGAGGGATGTCGGGCACCAAATCCAAAACCACCTTCGATTCTGCTGCCTCGGACGGAGGCAGCCGATCGACCGAAGAACGTGACGTCCACCATTCTCCTCCGTCCTCAACCGCAACTTTCATTTCATCGCAGCCGAACAACAACTCCTCGAGTAATCTTAGCTTCACAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCCATCCTAGGCTACAATAACCCCAGCACCTACAACACAAACCTCCCAAAACCCGACGACATTCCACCGTCATCGTCGTCGATGTTTCAACAACCTGGATTGACAATGTTCCCTGCCATCACCGACTTAGCATCGAGCGGATCAGTGCTGACTGAAGGCGGGATGTACGGTGGGATGTACGTACAGCAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAACCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1497 48.23 MNNSSSSSSSSSSSASPNWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPPPPSPPPFHFSTHQSEICDSDLKTIAASFLREPPTTHFPEQHFHHLHAPPPLPLPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIANSNLPIGGMSGTKSKTTFDSAASDGGSRSTEERDVHHSPPSSTATFISSQPNNNSSSNLSFTMPIKQDPSDQYWSILGYNNPSTYNTNLPKPDDIPPSSSSMFQQPGLTMFPAITDLASSGSVLTEGGMYGGMYVQQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22096693 22100168 + Lsi06G011800.1 Lsi06g01180 665910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01180 498 MobiDBLite consensus disorder prediction 60 76 - -
Lsi06g01180 498 MobiDBLite consensus disorder prediction 101 140 - -
Lsi06g01180 498 MobiDBLite consensus disorder prediction 55 80 - -
Lsi06g01180 498 Gene3D AP2/ERF domain 147 215 IPR036955 GO:0003700|GO:0006355
Lsi06g01180 498 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Lsi06g01180 498 MobiDBLite consensus disorder prediction 113 137 - -
Lsi06g01180 498 CDD AP2 248 309 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 MobiDBLite consensus disorder prediction 319 380 - -
Lsi06g01180 498 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 131 368 - -
Lsi06g01180 498 SUPERFAMILY DNA-binding domain 248 309 IPR016177 GO:0003677
Lsi06g01180 498 ProSiteProfiles AP2/ERF domain profile. 249 307 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 CDD AP2 146 215 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 MobiDBLite consensus disorder prediction 356 380 - -
Lsi06g01180 498 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 131 368 - -
Lsi06g01180 498 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 Pfam AP2 domain 147 205 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 SUPERFAMILY DNA-binding domain 146 215 IPR016177 GO:0003677
Lsi06g01180 498 SMART rav1_2 249 313 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 SMART rav1_2 147 219 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Lsi06g01180 498 MobiDBLite consensus disorder prediction 319 342 - -
Lsi06g01180 498 ProSiteProfiles AP2/ERF domain profile. 147 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01559 Lsi-Chr3:26554340 Lsi06g01180 Lsi-Chr6:22096693 3.05E-46 dispersed
Lsi04g00187 Lsi-Chr4:2003090 Lsi06g01180 Lsi-Chr6:22096693 1.36E-12 dispersed
Lsi04g01456 Lsi-Chr4:22324688 Lsi06g01180 Lsi-Chr6:22096693 3.91E-60 dispersed
Lsi06g01084 Lsi-Chr6:21114522 Lsi06g01180 Lsi-Chr6:22096693 2.92E-07 dispersed
Lsi06g01180 Lsi-Chr6:22096693 Lsi10g01048 Lsi-Chr10:14712752 5.99E-122 dispersed
Lsi10g01313 Lsi-Chr10:17329232 Lsi06g01180 Lsi-Chr6:22096693 1.40E-09 dispersed
Lsi06g01180 Lsi-Chr6:22096693 Lsi01g00869 Lsi-Chr1:7000981 5.64E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25516 PF00847 AP2 3.70E-13 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01180 K09285 - csv:101210453 683.715