Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01180 | ATGAATAACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCCTCTCCAAATTGGCTTGCCTTTTCTCTCTCTAATAATCCTAACTCTCTTTCTCTATTCCATCATCATCCTAATTCTACCGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCTACTCCTCCTCCTCCTCCGCCACCGCCATCGCCGCCTCCCTTTCACTTTTCTACCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTACGTGAACCACCAACCACCCATTTCCCTGAACAGCACTTCCACCATCTCCACGCGCCACCGCCACTGCCGCTGCCACCGACTCAATCTGATACTTCACCGCCCCCACCACCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCCATCTACCGCGGTGTTACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTGTGGGATAATAGTTGCAGAAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCTTCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGGAATAAAGATCTTTATCTTGGAACATTCAGCACTCAAGAAGAAGCAGCGGAAGCCTATGATATAGCAGCCATAAAATTCAGAGGCCTCAATGCGGTTACAAACTTCGACATCAGTCGTTATGACGTGAAGAGCATTGCAAACAGCAACCTCCCGATCGGAGGGATGTCGGGCACCAAATCCAAAACCACCTTCGATTCTGCTGCCTCGGACGGAGGCAGCCGATCGACCGAAGAACGTGACGTCCACCATTCTCCTCCGTCCTCAACCGCAACTTTCATTTCATCGCAGCCGAACAACAACTCCTCGAGTAATCTTAGCTTCACAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCCATCCTAGGCTACAATAACCCCAGCACCTACAACACAAACCTCCCAAAACCCGACGACATTCCACCGTCATCGTCGTCGATGTTTCAACAACCTGGATTGACAATGTTCCCTGCCATCACCGACTTAGCATCGAGCGGATCAGTGCTGACTGAAGGCGGGATGTACGGTGGGATGTACGTACAGCAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAACCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA | 1497 | 48.23 | MNNSSSSSSSSSSSASPNWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPPPPSPPPFHFSTHQSEICDSDLKTIAASFLREPPTTHFPEQHFHHLHAPPPLPLPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIANSNLPIGGMSGTKSKTTFDSAASDGGSRSTEERDVHHSPPSSTATFISSQPNNNSSSNLSFTMPIKQDPSDQYWSILGYNNPSTYNTNLPKPDDIPPSSSSMFQQPGLTMFPAITDLASSGSVLTEGGMYGGMYVQQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22096693 | 22100168 | + | Lsi06G011800.1 | Lsi06g01180 | 665910 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 60 | 76 | - | - | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 101 | 140 | - | - | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 55 | 80 | - | - | |
Lsi06g01180 | 498 | Gene3D | AP2/ERF domain | 147 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | Gene3D | AP2/ERF domain | 249 | 309 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 113 | 137 | - | - | |
Lsi06g01180 | 498 | CDD | AP2 | 248 | 309 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 319 | 380 | - | - | |
Lsi06g01180 | 498 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM | 131 | 368 | - | - | |
Lsi06g01180 | 498 | SUPERFAMILY | DNA-binding domain | 248 | 309 | IPR016177 | GO:0003677 | |
Lsi06g01180 | 498 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 307 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | CDD | AP2 | 146 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 356 | 380 | - | - | |
Lsi06g01180 | 498 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 131 | 368 | - | - | |
Lsi06g01180 | 498 | Pfam | AP2 domain | 249 | 299 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | Pfam | AP2 domain | 147 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | SUPERFAMILY | DNA-binding domain | 146 | 215 | IPR016177 | GO:0003677 | |
Lsi06g01180 | 498 | SMART | rav1_2 | 249 | 313 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | SMART | rav1_2 | 147 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | PRINTS | Ethylene responsive element binding protein signature | 289 | 309 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | PRINTS | Ethylene responsive element binding protein signature | 148 | 159 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi06g01180 | 498 | MobiDBLite | consensus disorder prediction | 319 | 342 | - | - | |
Lsi06g01180 | 498 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01559 | Lsi-Chr3:26554340 | Lsi06g01180 | Lsi-Chr6:22096693 | 3.05E-46 | dispersed | |
Lsi04g00187 | Lsi-Chr4:2003090 | Lsi06g01180 | Lsi-Chr6:22096693 | 1.36E-12 | dispersed | |
Lsi04g01456 | Lsi-Chr4:22324688 | Lsi06g01180 | Lsi-Chr6:22096693 | 3.91E-60 | dispersed | |
Lsi06g01084 | Lsi-Chr6:21114522 | Lsi06g01180 | Lsi-Chr6:22096693 | 2.92E-07 | dispersed | |
Lsi06g01180 | Lsi-Chr6:22096693 | Lsi10g01048 | Lsi-Chr10:14712752 | 5.99E-122 | dispersed | |
Lsi10g01313 | Lsi-Chr10:17329232 | Lsi06g01180 | Lsi-Chr6:22096693 | 1.40E-09 | dispersed | |
Lsi06g01180 | Lsi-Chr6:22096693 | Lsi01g00869 | Lsi-Chr1:7000981 | 5.64E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25516 | PF00847 | AP2 | 3.70E-13 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01180 | K09285 | - | csv:101210453 | 683.715 |