Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01184 ATGGCTTCCGATTCTTCATCTGAGGGAGCTGCTCTCCATCCATTAAGATACAGTATGATGAGTATGGAGGAGAAAAGGAATTTGGTCTATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGACAAGAGATTTTAGAGATCCTATGTGCAGAGATGGGAAAAGAGAGGAAATATACTGGATTAACAAAACTAAAAATAATTGAGAACCTTCTGAAAATTGTTGGTGAAAAGAAATCAGGGTCAACTGAGGATGTAACAGACATCGACAGTCAGTCTTCTCCTTGTCTTTCTCCAAAGATTACCAAAAGGCAAAGAAAAATTGATCAGCCAGCACGGCTACCTGTTCCTGTAAACCATATTCCAATTAGTAACACTAGGAGTGATTCAAATATTGCAGTTTACTGCAGAAATTCGGCATGCAAAGCAACCTTAAATCAAGATGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGTTATCAGTATGATGATAATAAGGATCCTAGTCTTTGGTTAAGTTGCTGCTCTGACCCACCATTTCAAGACACTTCATGCGGCATGTCGTGCCATCTTGAATGTGCATTGAAACATGAAAAATCTGGGATTTCTAGAGGAAAGCAGACGGGAATTGAAGGGACTTTTTGTTGTGTATCTTGTGGAAAAGTCAACGACTTGCTTGGGTGTTTGAGAAAACAATTGATGAAGGCAAAGGAAACAAGGAGAGTGGATATACTGTGTTACCGCATCTCTTTAAGCAAAAAGCTTTTGAGTGAAGGTGAAAAGTATCAAGACGTTTATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAGGTGGGTCCTTTGACTGGTGTACCAGTTGGTACGGGCAGAGGAATAGTGAACAGGCTTTCTTCAGGACCGGAGGTTCAGAAACTCTGCTCGTTAGCCATCGATACACTCAACTCCTTGCTCTCCACGAAGATCTTACATCAGTTGCCCAGTTCCATGATACAAGATACTAATTTGGTAGCTACAAACTTCTTAAGGTTCGAAGATGTTGATGCAACATACGTTACGGTGGTTGTGGGTACTGAAGATGTTTCTTCCGGAAAAACTGTTGGTTACAGGCTATGGCATCGAAAGGCATGTGAAACAGATTACCCTGTAGAGCCAACTTGCACCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGGCTAACCCCATCTTCAGAATACTATTTGAAAGCCATTTCCTTTGATGGGACAGGAGATTTGGGGACATGTGAAGTTCAAGTCTCAACTGCTATTCCTCGGGAGGATGACACAAGTTTCTTGGTGATTGAAAGAAGTCAGAGTCCTATTACCAACTTCAGTGAGCTCTCTAATCCTTCTTCCGTAGAAGATGAAACCAACAATGTAATGCCTTGTAGTGACCAAACTGATAGTCGGACAGAAAGCTATCTTTCTTTTTGCAAGGACTCTAACAAGATCGTCACTACTAACCTGTCTGAGGATAGAATAAACTGCACCGATGTCGGTGGAGGGGGAACAGCAAAAGATTCTGTTTCGTTGTTGGACGAGGAACACGTTACAAGAAAAGGTAGCATGCTGCCTGATCCCAATGTTTTAAAACTTGAAGACAGGCATTCTTCTGAGGTCCATATCATTGAAGGTACAAGCATGAATAACGGCTCGAATTCTGCCATTCATGAAGGGACTAAATGCACACCATTTGTTAGCAGCTCCGAGGCTGGATTGCCAGTTACTCCTTGCAAAATGGAAATACTCAAGGATGTTCTCGGAAGGAGTGGCCGATCGAAGTCCAGCGCCAAGGATCGAGATAATAATGTGTCTGGAGAGGAACTCCGACATGGCAGCATGTCTAAGAAGAGAAAGGCGGAGAGGCAAGATGCGGATTGTACTGCAAACGGTATTTCGGATAAGGATTTTGAGTATTATGTGAAGTTGATTAGATGGCTAGAACGCGAAGGACACATAGAGAAGAACTTCAGACAAAAATTCTTAACTTGGTATAGCTTGAGAGCCACAACACAAGAAGTTAGGATAGTGAAGACCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCGGAGCAACTTGTGGATACCTTTTCGGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTTCTGGATTTTGTATGAAGCTTTGGCATTGA 2211 42.29 MASDSSSEGAALHPLRYSMMSMEEKRNLVYEISDQPHASELLQSWSRQEILEILCAEMGKERKYTGLTKLKIIENLLKIVGEKKSGSTEDVTDIDSQSSPCLSPKITKRQRKIDQPARLPVPVNHIPISNTRSDSNIAVYCRNSACKATLNQDDKFCKRCSCCICYQYDDNKDPSLWLSCCSDPPFQDTSCGMSCHLECALKHEKSGISRGKQTGIEGTFCCVSCGKVNDLLGCLRKQLMKAKETRRVDILCYRISLSKKLLSEGEKYQDVYQIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCSLAIDTLNSLLSTKILHQLPSSMIQDTNLVATNFLRFEDVDATYVTVVVGTEDVSSGKTVGYRLWHRKACETDYPVEPTCTLSQPNLRFVVRGLTPSSEYYLKAISFDGTGDLGTCEVQVSTAIPREDDTSFLVIERSQSPITNFSELSNPSSVEDETNNVMPCSDQTDSRTESYLSFCKDSNKIVTTNLSEDRINCTDVGGGGTAKDSVSLLDEEHVTRKGSMLPDPNVLKLEDRHSSEVHIIEGTSMNNGSNSAIHEGTKCTPFVSSSEAGLPVTPCKMEILKDVLGRSGRSKSSAKDRDNNVSGEELRHGSMSKKRKAERQDADCTANGISDKDFEYYVKLIRWLEREGHIEKNFRQKFLTWYSLRATTQEVRIVKTFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPSGFCMKLWH 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22123899 22129340 - Lsi06G011840.1 Lsi06g01184 665914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01184 736 CDD FN3 349 426 IPR003961 GO:0005515
Lsi06g01184 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 - -
Lsi06g01184 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 IPR044514 GO:0010048|GO:0040029
Lsi06g01184 736 MobiDBLite consensus disorder prediction 604 640 - -
Lsi06g01184 736 CDD PHD_VIN3_plant 161 225 - -
Lsi06g01184 736 Pfam PHD - plant homeodomain finger protein 141 259 IPR032881 -
Lsi06g01184 736 MobiDBLite consensus disorder prediction 458 482 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01184 Lsi11g00762 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00897 Lsi-Chr6:18561032 Lsi06g01184 Lsi-Chr6:22123899 1.93E-26 dispersed
Lsi06g01184 Lsi-Chr6:22123899 Lsi11g00275 Lsi-Chr11:2814108 8.07E-22 dispersed
Lsi08g01018 Lsi-Chr8:18751282 Lsi06g01184 Lsi-Chr6:22123899 8.06E-18 transposed
Lsi11g00762 Lsi-Chr11:8597210 Lsi06g01184 Lsi-Chr6:22123899 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01184 - - csv:101220456 1324.69