Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01189 ATGGCCGGAAAACTGAGTCTGGAGGAGATCAAGAACGAAACTGTTGACCTGGAGAAAATACCAGTTGCAGAAGTGTTTGAACAATTGAAATGTGGCCCAGAAGGTCTCTCAACTCAAGAAGGAGAAAACAGACTCCAATTATTTGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTAAAATTTTTGGGGTTCATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATTGCTTTGGCAAATGGTGGTGGAAAGCCTCCAGATTGGGAAGATTTTGTGGGAATTATATGTTTATTGGTGATCAACTCCACAATCAGTTTCATTGAGGAAAATAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGTCTTGCCCCTAAAACTAAGATCTTAACACTTTGCAACTGCAAGGAGGATGTCAAGAAGAAGGCTCATGCTGTTATTGATAAATTTGCAGAACGCGGTCTTCGCTCGCTGGCCGTTGCGAGACAGGAAGTACCTGAGAAAAGAAAAGAAAGTCCTGGAAGTCCATGGCAGTTTGTTGGATTATTGCCTCTGTTTGATCCACCAAGGCATGACAGTGATCAGCTAGCCATTGCCAAAGAAACTGGTAGAAGACTTGGAATGGGGACTAACATGTACCCATCTGCATCATTACTTGGTCAACACAAGGATGAAAGCCTTGCTGGCATTCCTATAGAAGAGCTAATTGAAAAGGCAGATGGTTTTGCTGGAGTTTTTCCAGAGCACAAATACGAGATCGTAAAGAAGCTGCAAGAGAGTAAACATATTTGTGGAATGACCGGAGACGGTGTGAACGATGCTCCTGCACTGAAGAAGGCTGACATTGGAATTGCAGTTGCTGATGCTACTGATGCTGCTAGAGGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTGAGTGTTATCATCAGTGCTGTCCTTACAAGTACAATCATGACCATTTCAAAGGATAGAGTGAAGCCATCTCCATTACCTGATAGTTGGAAATTGAAAGAGATATTTGCAACAGGCATTATGCTTGGAGGTTACTTAGCATTGATGACTGTCATATTCTTCTGGATAATGAAAGAGACAGATTTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTTTACCTACAAGTAGCAACACTCATAGCAGTATATGCAAATTGGGAATTTGCAAAGATAAAAGGAGCTGGATGGGGATGGGCTGGTGTAGTTTGGATCTACAGTGTTATTTTCTACATTCCATTAGACTTTATCAAGTTTGCAATTCGCTATATCTTAAGTGGCAAGGCTTGGCTTAACTTACTAGAAAACAAGACCGCGTTTACGACGAAGAAAGACTATGGAAGGGAGGAAAGAGAAGCTCAATGGGCTGCTACTCAAAGAACCTTACATGGCCTTCAACCAGCACCAGAAAAAACCAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCCGAAATCGCCGAGCAAGCCAAAAGACGAGCAGAGATAGCTAGGTAA 1569 42.32 MAGKLSLEEIKNETVDLEKIPVAEVFEQLKCGPEGLSTQEGENRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKILTLCNCKEDVKKKAHAVIDKFAERGLRSLAVARQEVPEKRKESPGSPWQFVGLLPLFDPPRHDSDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESLAGIPIEELIEKADGFAGVFPEHKYEIVKKLQESKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTVIFFWIMKETDFFPEKFGVRSIKDSPKEMMAALYLQVATLIAVYANWEFAKIKGAGWGWAGVVWIYSVIFYIPLDFIKFAIRYILSGKAWLNLLENKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPEKTSLFLEKNSYRELSEIAEQAKRRAEIAR 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22187758 22194972 + Lsi06G011890.1 Lsi06g01189 665919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01189 522 Coils Coil 504 522 - -
Lsi06g01189 522 Gene3D - 502 522 - -
Lsi06g01189 522 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01189 522 PRINTS H+-transporting ATPase (proton pump) signature 306 331 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01189 522 PRINTS H+-transporting ATPase (proton pump) signature 247 263 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01189 522 PRINTS H+-transporting ATPase (proton pump) signature 275 291 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01189 522 Gene3D - 401 447 - -
Lsi06g01189 522 Gene3D - 313 324 - -
Lsi06g01189 522 Gene3D - 67 139 - -
Lsi06g01189 522 Gene3D - 325 400 - -
Lsi06g01189 522 PRINTS P-type cation-transporting ATPase superfamily signature 298 310 - -
Lsi06g01189 522 PRINTS P-type cation-transporting ATPase superfamily signature 275 294 - -
Lsi06g01189 522 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Lsi06g01189 522 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 250 325 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01189 522 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Lsi06g01189 522 SUPERFAMILY Calcium ATPase, transmembrane domain M 325 448 IPR023298 -
Lsi06g01189 522 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 133 IPR023298 -
Lsi06g01189 522 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lsi06g01189 522 Gene3D - 195 312 IPR023214 -
Lsi06g01189 522 Gene3D - 140 194 IPR023299 GO:0000166
Lsi06g01189 522 PANTHER PLASMA MEMBRANE ATPASE 400 522 - -
Lsi06g01189 522 PANTHER PLASMA MEMBRANE ATPASE 4 138 - -
Lsi06g01189 522 PANTHER PLASMA MEMBRANE ATPASE 136 324 - -
Lsi06g01189 522 PANTHER CALCIUM-TRANSPORTING ATPASE 325 401 - -
Lsi06g01189 522 SUPERFAMILY HAD-like 151 321 IPR036412 -
Lsi06g01189 522 Pfam haloacid dehalogenase-like hydrolase 208 289 - -
Lsi06g01189 522 PANTHER CALCIUM-TRANSPORTING ATPASE 400 522 - -
Lsi06g01189 522 PANTHER CALCIUM-TRANSPORTING ATPASE 4 138 - -
Lsi06g01189 522 PANTHER CALCIUM-TRANSPORTING ATPASE 136 324 - -
Lsi06g01189 522 PANTHER PLASMA MEMBRANE ATPASE 325 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01189 Lsi11g00377 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01189 Lsi-Chr6:22187758 Lsi08g01132 Lsi-Chr8:19941870 0 dispersed
Lsi11g00770 Lsi-Chr11:8790027 Lsi06g01189 Lsi-Chr6:22187758 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01189 K01535 - csv:101221783 677.167