Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01195 ATGGCGGCCGGAGAAGAGGAGGTGGCCGGAAAGAAGGGTCGTGGGTTGCAGAAAAGTTATTTTGATGTGCTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTAAAAGAGATTGAAGGGATTAAAGAGATTAGTGTGATTGTTGCCACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAGCACAAATTGTTAAAGCCCTAAACCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCAAGTCCGTATGCGGTGGCGAGTGGGCTGTTGCTGCTGCTGTCGTTACTCAAATATGTGAATCCTATTTTCCGATGGGTGGCTTTAGCCGCCGTCGCCGCCGGAATCTGGCCCATTCTCCTGAAAAGCTTCTCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACGATTGTGCTGAAGGATTATTTGGAAGCAGCGACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGGCCACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAATTGTTGGCGCCGACGAGGTCAAATTAGGGACTCTGCTGGCTGTGAAGGCCGGTGAAGACATACCTATCGATGGAATCGTTGTGGAAGGAAAATGTGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAAAAGAATTCCACTGTTTGGGCTGGTACCATTAATGTAAATGGTTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAGAACAATAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAGTTGCTTTGAGACTTCCCAATCGCAGCCATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGTGCATGTCCCTGTGCTCTTGTTCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATCAAAGGAGGTGACTACCTTGAAACTCTTGGGAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATACTGGGTGTCCAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAACTGCACTTGTTGACCATGGAAGATCACTATCCATTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATATTCCTGGAGAAGGTGTTTATGGAAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAGAATGGCTACAAGAGCCAACTGCGAAACAGTCCCAGAGATCAAAGATGAAGCGAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAACTACTGCAGCTGGAATCTTTAGTCTATCAGATTCTTGTAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAACCATGCTCACCGGAGACAGTTCAGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTGCAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGAGCAACAGCTATGATTGGAGATGGTCTAAACGATGCCCCTGCCTTGGCCACAGCTGATATTGGCATATCAATGGGAATCTCAGGCTCAGCCCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAGTAAAGTAATCGAAAATGTGATTCTATCGGTTGCTCCTAGGATTGCTATACTCGGCTTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTGCTCACTGTTCCTCCAAACATAAATGCTGTCATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCATGGGTGTGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCATCACCATCACCATGAGCACGAGGATTGCGATTCTCTCAAGAAAACTCATGATGGTTGTTTACCTCAGAACCATGCTTCCAAGTGTGACTCCAAGTTGAAAAATTCAAGTTCATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAGTGTAATACTCTGTGAACATGATCATGGGTGCAACAATGACAGCTCCGACTCTTCTAGTCATAGTCGTCATCACCATCACCACCACCATCATCATGAGCACGAGGACTGTGACTCTCTCAAGAAAACTCATGATGGTTGCTTGCCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAAACTTCAAGTTCATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAAGTAGATGATTCTGCAGGGAGTCTAAAACCGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGATCATCATCATGCTTATTCTTCCTGTGCTGATCATCATGTTGAGGACAACCGTTGCTCTCCAAAGAATACACAAGAGTTTTGCTCCTTTCAGAAGTGTGCATCAAATTCATGTGAGGAAATCAAGTGCACAAGCTTACCCGCAAGCCTTGATGGTTCTGCTGTCATCGTTGAGCTCCATGAAAGTGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAATGTGATTTGGACGACAGCCACTCATCCAGTCCTGAACATCATATTGGTAATGGTTGTTGCTCTCAAAAGAACGCTCAGAAGGTTTCTTTATCTCATCCAATGTGTCATTCTGAAACCTACAATTTGAGTCCATGTGGGAAAACCAAATGTGTGGACTCAACTGAGAGGCAACAAGCACCTGAATGCAGTCAAGAACTCCTCCATGACCATAAGCATTGCCACCAAGGAAGCTTCGAGGCTTCCAATTTTGTCTTGGAATCCCATGAAAAGCACAGGAAAACTTGCAGTGAACCTTGTAAATCAAGATCAATAAGCGGGTGCACGGAAGATGAATGCTGGGAAAAGGTTGAAATGATAGATGATTGTGCTGAAGCAAACAGGCACCACATGATGAAAGATCATCATTGCAATACTCATCCGAGTCTTCAAAATGAAGGGGTCCATCCTCATTGTAAGGCGTCAAATGAAGATAATGATGGAGCAATCAACCATACCGTAAATATCGAGCTCGAAGCAGACCATTCAAACCCAAAACGTCCCAACACTTGTAATAAGGCTTTGGAAAACAGAGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAAGTGGAAAATCTTGTGCTGGTTTGGATAAGAGAGAAATGGGTGGGTGTTGCAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGTGATATCAGAATGGCGGTCCGAGGAGGCTTAAACGAAATTATTATAGAATAG 3756 44.22 MAAGEEEVAGKKGRGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEISVIVATRTVIVLHDNLLVSQAQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGLLLLLSLLKYVNPIFRWVALAAVAAGIWPILLKSFSAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAGHKANAVMSSLLSIAPQKAVLADTGEIVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINVNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPVALRLPNRSHWFHLALVVLVSACPCALVLSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMATALVDHGRSLSIDPKPENVDDFQNIPGEGVYGRIDGKDIYIGNRRMATRANCETVPEIKDEAKDGRTVGYIFCGTTAAGIFSLSDSCRTGAKEAMDELRSLGIKTTMLTGDSSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKREGATAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANSKVIENVILSVAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSAAHCSSKHKCCHVSSHSDEYSGHTHDHGCDNHSSHSSRHRHHHHHHEHEDCDSLKKTHDGCLPQNHASKCDSKLKNSSSCKKSKLVDSSSKVDGSTGSVILCEHDHGCNNDSSDSSSHSRHHHHHHHHHEHEDCDSLKKTHDGCLPQNCASKCDSGMKTSSSCKKSKLVDSSSKVDDSAGSLKPCEHGHVHNDQPADHDHHHAYSSCADHHVEDNRCSPKNTQEFCSFQKCASNSCEEIKCTSLPASLDGSAVIVELHESGCCTHNTQSAQHDHDIQTPKCDLDDSHSSSPEHHIGNGCCSQKNAQKVSLSHPMCHSETYNLSPCGKTKCVDSTERQQAPECSQELLHDHKHCHQGSFEASNFVLESHEKHRKTCSEPCKSRSISGCTEDECWEKVEMIDDCAEANRHHMMKDHHCNTHPSLQNEGVHPHCKASNEDNDGAINHTVNIELEADHSNPKRPNTCNKALENRGTNNCKSCKRGSSQLKSGKSCAGLDKREMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22295824 22304832 + Lsi06G011950.1 Lsi06g01195 665925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01195 1251 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 5 725 - -
Lsi06g01195 1251 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 174 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi06g01195 1251 Pfam E1-E2 ATPase 210 378 - -
Lsi06g01195 1251 ProSitePatterns E1-E2 ATPases phosphorylation site. 402 408 IPR018303 -
Lsi06g01195 1251 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 151 494 - -
Lsi06g01195 1251 SFLD p-type atpase 383 653 IPR044492 -
Lsi06g01195 1251 SUPERFAMILY Calcium ATPase, transmembrane domain M 151 394 IPR023298 -
Lsi06g01195 1251 MobiDBLite consensus disorder prediction 742 767 - -
Lsi06g01195 1251 SUPERFAMILY HMA, heavy metal-associated domain 15 88 IPR036163 GO:0046872
Lsi06g01195 1251 ProSitePatterns Hypothetical cof family signature 2. 601 623 - -
Lsi06g01195 1251 Pfam haloacid dehalogenase-like hydrolase 396 615 - -
Lsi06g01195 1251 SUPERFAMILY HAD-like 400 702 IPR036412 -
Lsi06g01195 1251 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 151 704 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lsi06g01195 1251 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 5 725 - -
Lsi06g01195 1251 Gene3D - 13 86 - -
Lsi06g01195 1251 SFLD C1.7: P-type atpase like 383 653 - -
Lsi06g01195 1251 SUPERFAMILY Calcium ATPase, transduction domain A 214 299 IPR008250 -
Lsi06g01195 1251 MobiDBLite consensus disorder prediction 788 814 - -
Lsi06g01195 1251 ProSiteProfiles Heavy-metal-associated domain profile. 18 84 IPR006121 GO:0046872
Lsi06g01195 1251 CDD P-type_ATPase_HM 101 703 - -
Lsi06g01195 1251 PRINTS P-type cation-transporting ATPase superfamily signature 547 557 - -
Lsi06g01195 1251 PRINTS P-type cation-transporting ATPase superfamily signature 249 263 - -
Lsi06g01195 1251 PRINTS P-type cation-transporting ATPase superfamily signature 601 620 - -
Lsi06g01195 1251 PRINTS P-type cation-transporting ATPase superfamily signature 625 637 - -
Lsi06g01195 1251 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Lsi06g01195 1251 Gene3D - 189 303 - -
Lsi06g01195 1251 Gene3D - 411 533 IPR023299 GO:0000166
Lsi06g01195 1251 CDD HMA 21 82 IPR006121 GO:0046872
Lsi06g01195 1251 Gene3D - 391 652 IPR023214 -
Lsi06g01195 1251 ProSitePatterns Anaphylatoxin domain signature. 1197 1231 IPR000020 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01690 Lsi-Chr1:15509974 Lsi06g01195 Lsi-Chr6:22295824 6.69E-54 transposed
Lsi03g00946 Lsi-Chr3:18059423 Lsi06g01195 Lsi-Chr6:22295824 5.92E-18 transposed
Lsi03g00947 Lsi-Chr3:18067213 Lsi06g01195 Lsi-Chr6:22295824 6.41E-41 transposed
Lsi04g01385 Lsi-Chr4:21656444 Lsi06g01195 Lsi-Chr6:22295824 4.34E-62 transposed
Lsi09g00270 Lsi-Chr9:2813136 Lsi06g01195 Lsi-Chr6:22295824 4.39E-75 transposed
Lsi10g00233 Lsi-Chr10:3799223 Lsi06g01195 Lsi-Chr6:22295824 4.27E-62 transposed
Lsi10g00527 Lsi-Chr10:7523348 Lsi06g01195 Lsi-Chr6:22295824 1.44E-52 transposed
Lsi01g00038 Lsi-Chr1:431400 Lsi06g01195 Lsi-Chr6:22295824 3.58E-27 transposed
Lsi11g00779 Lsi-Chr11:8958115 Lsi06g01195 Lsi-Chr6:22295824 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01195 K01534 - pop:18099955 1120.15