Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01202 ATGAGTGGTGCTGGAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCTCACGCCAAGCTGGAAACTGGATCAGAGATGATCTTTCCTCTGAAGTTGAAAAGATGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAATCACATTCACAGCCAATTTGTTCAACCTTCAAGAGGAGACCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGACAACTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAAGAATTACTTTTGCCAAAGCTTCAAGGTGGCAAATCTCCGTCATCAACTAATACGAAAGGAAATGCAGAAAAGTTTGAGCCCGTGCTCAAGATAAACCAACAAAGGAAAAGGTGGAATAACAAAGGAAAAAAGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAAAGGAGAACAAGATACCTTATAATTAAAATGAAGCTAGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAATTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCCGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAGTGTCTGGATCCACCATTAGACACGAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGTAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCAGATGATTCTGAAGATGATGACTATGATCCAGATAAGGAGAATGGCTATGACAACGCCAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAACTGCTAGAGATGTTATTGGATGTGAAGATCACTTCGGTGCCAGTAGCAGCGTAGTATCTGATGGATCCAATGAAGAGGGTATTACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTTGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGGAGCTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGCGAAAAAAAGAGTCAAGACATTGAAATGGAAGCAGAGAAAAAACTTCTCAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTTAGAACTAGAAAGGTGGAGGGAGCAACACAACCCCATAGTTCTCATAAGACTTCCAGTGAGTCCAGATTAGCAGATTCAAAGGAAATGTCTGCGAATCTTCTTTCATTAGAGGATGCACCAATGAAAGAACTGCAGCTGAAATTGCACGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAACCATCACTTGTATCTTCCAACCATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGGAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGGGTATCAAATAAGAAAGATGATGGGATTTTAGATAGGTCACACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAGGGAGGAGATAAGATGGATGCAAATAGCCAAGGTGGATTGGATGAATGTAAGAAGCTCGCTTATGACTGTAGGAAGAAAAAAATCATTTGCAAGCTGGAACATGGGGATGAGAGAGGTTTGTTAAGAAAAGAGAAGATAGGAGAGATAATTGAGCTCTATAGCAATTTCGTCGAGAAGGATCCTCCTCCAAGGTATACTTTCGATAATTTTTAA 2355 40.34 MSGAGRRLIEKESGKCSHAKLETGSEMIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLPKLQGGKSPSSTNTKGNAEKFEPVLKINQQRKRWNNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILNCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDIFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKENGYDNASGEENDKDVLEESSSSTSLSWSLDGEDLTARDVIGCEDHFGASSSVVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEGASEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIEMEAEKKLLNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKVEGATQPHSSHKTSSESRLADSKEMSANLLSLEDAPMKELQLKLHGSHCKKKQHRKPSLVSSNHNKDAFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRVSNKKDDGILDRSHMFEQSIVYVPVAVLKEKGGDKMDANSQGGLDECKKLAYDCRKKKIICKLEHGDERGLLRKEKIGEIIELYSNFVEKDPPPRYTFDNF 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22397575 22411435 + Lsi06G012020.1 Lsi06g01202 665932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01202 784 SMART PHD_3 239 292 IPR001965 -
Lsi06g01202 784 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 689 - -
Lsi06g01202 784 SUPERFAMILY Homeodomain-like 498 561 IPR009057 -
Lsi06g01202 784 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Lsi06g01202 784 Gene3D - 497 569 - -
Lsi06g01202 784 MobiDBLite consensus disorder prediction 339 353 - -
Lsi06g01202 784 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Lsi06g01202 784 Pfam Homeodomain 507 550 IPR001356 GO:0003677
Lsi06g01202 784 MobiDBLite consensus disorder prediction 556 579 - -
Lsi06g01202 784 MobiDBLite consensus disorder prediction 330 382 - -
Lsi06g01202 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Lsi06g01202 784 CDD homeodomain 503 556 IPR001356 GO:0003677
Lsi06g01202 784 CDD PHD_PRHA_like 239 291 IPR045876 -
Lsi06g01202 784 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Lsi06g01202 784 MobiDBLite consensus disorder prediction 38 71 - -
Lsi06g01202 784 MobiDBLite consensus disorder prediction 354 371 - -
Lsi06g01202 784 Pfam PHD-finger 239 294 IPR019787 -
Lsi06g01202 784 SMART HOX_1 497 559 IPR001356 GO:0003677
Lsi06g01202 784 MobiDBLite consensus disorder prediction 438 463 - -
Lsi06g01202 784 ProSiteProfiles 'Homeobox' domain profile. 495 555 IPR001356 GO:0003677
Lsi06g01202 784 PANTHER POLYCOMB PROTEIN PCL 1 689 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00246 Lsi-Chr5:3199259 Lsi06g01202 Lsi-Chr6:22397575 2.18E-09 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25517 PF00628 PHD 1.30E-09 CL0390 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01202 - - csv:101212164 1238.4