Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01209 ATGGAGAGTATCGGAGACGGTTACTTCAGTTCCTTGGGGAGTGACATCTTCATAGCAGCCGAAGAGCTCGACAGTTTTGGTGAAGACAGTTGGGAATTCGATGAGCCGGTTTCTGGCTATTATGATTCGAGTTCGCCGGATGGATTTCAGGCATCGTCGTCGGCTTCGAAGAACATAGTATCGGAAAGAAATAGGAGAAGGAAGCTCAACGAGAGGCTTTTCGCACTCCGATCGGTTGTTCCCAATATAACTAAGATGGATAAGGCTTCCATAATAAAAGATGCAATCGATTACATCCAAGATTTGCATGAGCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCAGGAAAGTTGAAGAAGATAGCAGGGTATGAATTTGACCAAGAGCTTCCCTCGTTGATCGGATCAAAGAGGAAGAAAACTGTGCAGTACTTCAGCTATGATTCTTCTGCTTCAAGAATTTCCCCCATTGAAGTCCTGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGTAGTGAGCATGACTTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAATCACTAAAGCTCAAGATCATCACTGCCAATGTTACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGTAACTACTCTCTCCCCAATGTAA 687 43.23 MESIGDGYFSSLGSDIFIAAEELDSFGEDSWEFDEPVSGYYDSSSPDGFQASSSASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRIQAEIYELESGKLKKIAGYEFDQELPSLIGSKRKKTVQYFSYDSSASRISPIEVLDLSVTYMGDRTIVVSMTCCKRADSMVKLCEVFESLKLKIITANVTAVSGRLLKTVFIEVTTLSPM 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22450517 22452000 - Lsi06G012090.1 Lsi06g01209 665939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01209 228 PANTHER TRANSCRIPTION FACTOR BHLH35 29 222 - -
Lsi06g01209 228 Gene3D - 50 119 IPR036638 GO:0046983
Lsi06g01209 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 117 IPR036638 GO:0046983
Lsi06g01209 228 SMART finulus 59 108 IPR011598 GO:0046983
Lsi06g01209 228 Pfam Helix-loop-helix DNA-binding domain 60 102 IPR011598 GO:0046983
Lsi06g01209 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Lsi06g01209 228 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 29 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01209 Lsi-Chr6:22450517 Lsi07g01198 Lsi-Chr7:17487021 6.95E-15 dispersed
Lsi04g00551 Lsi-Chr4:5051242 Lsi06g01209 Lsi-Chr6:22450517 2.34E-21 transposed
Lsi05g00454 Lsi-Chr5:5809879 Lsi06g01209 Lsi-Chr6:22450517 2.86E-08 transposed
Lsi07g01109 Lsi-Chr7:16476647 Lsi06g01209 Lsi-Chr6:22450517 1.22E-16 transposed
Lsi10g01223 Lsi-Chr10:16514396 Lsi06g01209 Lsi-Chr6:22450517 9.63E-17 transposed
Lsi11g00914 Lsi-Chr11:12615799 Lsi06g01209 Lsi-Chr6:22450517 1.37E-15 transposed
Lsi11g01209 Lsi-Chr11:20620419 Lsi06g01209 Lsi-Chr6:22450517 9.90E-19 transposed
Lsi11g00800 Lsi-Chr11:9486869 Lsi06g01209 Lsi-Chr6:22450517 1.44E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25519 PF00010 HLH 4.10E-12 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01209 - - cmo:103494233 337.806