Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01220 ATGGCGGTGGATCTCGCAGCTTTTCCGGCGAAGATGGATGATCAGACCGCCATTGAAGAAGCAGCCTCTGCCGGTTTACAGAGCATGGAGCATCTAATCCGTCTCTTATCCAAACAACAACACTCTGAAACTCCTATTAAAAATCTCAATTGCTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTCTTAAACCGAACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCTGTTCTCAATTCCCTCGATCCACCTCTCAAAACCCATTATCGTAAAGTTAATTTCTCCCCTGTTTCCAAATCCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGAAAGGTTGATCTCTCGATCTTTGCGACGCCGCCTGTGTGCAGCGGTAAACCGCCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACGATAAAAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGGGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCTAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA 837 49.94 MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLIRLLSKQQHSETPIKNLNCSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHYRKVNFSPVSKSPDSKDSTTTSSFVSTITGDGSVSNGKVDLSIFATPPVCSGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTIKVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22581595 22583691 - Lsi06G012200.1 Lsi06g01220 665950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01220 278 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01220 278 Gene3D WRKY domain 188 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi06g01220 278 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 270 - -
Lsi06g01220 278 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01220 278 Pfam Plant zinc cluster domain 158 201 IPR018872 -
Lsi06g01220 278 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01220 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 270 IPR044810 GO:0003700
Lsi06g01220 278 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi06g01220 278 MobiDBLite consensus disorder prediction 105 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01116 Lsi-Chr3:21344473 Lsi06g01220 Lsi-Chr6:22581595 2.15E-28 dispersed
Lsi05g02069 Lsi-Chr5:27610451 Lsi06g01220 Lsi-Chr6:22581595 1.48E-32 dispersed
Lsi06g01220 Lsi-Chr6:22581595 Lsi10g00187 Lsi-Chr10:3136522 2.74E-65 dispersed
Lsi06g01220 Lsi-Chr6:22581595 Lsi01g00960 Lsi-Chr1:7792775 1.02E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25520 PF03106 WRKY 1.20E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01220 - - bhj:120070667 514.612