Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01220 | ATGGCGGTGGATCTCGCAGCTTTTCCGGCGAAGATGGATGATCAGACCGCCATTGAAGAAGCAGCCTCTGCCGGTTTACAGAGCATGGAGCATCTAATCCGTCTCTTATCCAAACAACAACACTCTGAAACTCCTATTAAAAATCTCAATTGCTCTGGCCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTCTTAAACCGAACCGGCCACGCTAGATTCCGCCGTGGACCCTCCGATTCCCCAAATCCTGTTCTCAATTCCCTCGATCCACCTCTCAAAACCCATTATCGTAAAGTTAATTTCTCCCCTGTTTCCAAATCCCCTGATTCTAAGGATTCCACTACCACCTCTTCTTTTGTTTCCACGATCACCGGCGACGGCAGCGTTTCTAACGGAAAGGTTGATCTCTCGATCTTTGCGACGCCGCCTGTGTGCAGCGGTAAACCGCCGTTGGCGTTGAAGAGGAAGTGCGATGATAGCTCTGGATTTGGTTGTAAGGTTCCGTCGAAGCTCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGTGAAGAAGACGATAAAAGTTCCGGCGATCAGTTCTAAGATCGCTGATATACCTTCCGATGAATACTCTTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAAAAGGTGGAAAGAGCTCGGGACGATCCGACGATGCTCCTCGTAACTTACGACGGAGATCACCGTCACCCGCACCCTACGGTGACCGATGCTAGCGTGGGTGTCGTTTCCCAGAAGAGTTGA | 837 | 49.94 | MAVDLAAFPAKMDDQTAIEEAASAGLQSMEHLIRLLSKQQHSETPIKNLNCSGLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPLKTHYRKVNFSPVSKSPDSKDSTTTSSFVSTITGDGSVSNGKVDLSIFATPPVCSGKPPLALKRKCDDSSGFGCKVPSKLCHCAKRRKSGVKKTIKVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHPHPTVTDASVGVVSQKS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22581595 | 22583691 | - | Lsi06G012200.1 | Lsi06g01220 | 665950 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01220 | 278 | SUPERFAMILY | WRKY DNA-binding domain | 201 | 264 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01220 | 278 | Gene3D | WRKY domain | 188 | 265 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01220 | 278 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 8 | 270 | - | - | |
Lsi06g01220 | 278 | Pfam | WRKY DNA -binding domain | 205 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01220 | 278 | Pfam | Plant zinc cluster domain | 158 | 201 | IPR018872 | - | |
Lsi06g01220 | 278 | ProSiteProfiles | WRKY domain profile. | 198 | 264 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01220 | 278 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 8 | 270 | IPR044810 | GO:0003700 | |
Lsi06g01220 | 278 | SMART | WRKY_cls | 203 | 263 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Lsi06g01220 | 278 | MobiDBLite | consensus disorder prediction | 105 | 126 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01116 | Lsi-Chr3:21344473 | Lsi06g01220 | Lsi-Chr6:22581595 | 2.15E-28 | dispersed | |
Lsi05g02069 | Lsi-Chr5:27610451 | Lsi06g01220 | Lsi-Chr6:22581595 | 1.48E-32 | dispersed | |
Lsi06g01220 | Lsi-Chr6:22581595 | Lsi10g00187 | Lsi-Chr10:3136522 | 2.74E-65 | dispersed | |
Lsi06g01220 | Lsi-Chr6:22581595 | Lsi01g00960 | Lsi-Chr1:7792775 | 1.02E-70 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25520 | PF03106 | WRKY | 1.20E-25 | CL0274 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01220 | - | - | bhj:120070667 | 514.612 |