Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01226 ATGGCAGCGACGGTGGTGACGATGAGGATGAGGATGAGGATGATACCGACGGTGTGCGCCATGGCTTCATCTTCCCCAGAATCCCTCTTCGTCAAGAAAACCATCGCCTCCCACCAGACCGTCATCTTCTCCAAGTCCTATTGCCCGTATTGCGAAACAGCAAAAGCTGTTTTCAAGGATTTGCACAAAGTTCCTCATGTTGTTGAGCTAGATCAAAGGGATGATGGCAGAGCCATTCAAGATGCTCTTAGTGCACTTGTTGGAAGGCACACTGTACCTCAAGTGTTCATAGATGGAAAACACATAGGTGGATCAGATGATACTGTTGAAGCATATGAGAGTGGAGAGTTGGGTAAACTTCTGGGTATTAAGTAA 375 46.93 MAATVVTMRMRMRMIPTVCAMASSSPESLFVKKTIASHQTVIFSKSYCPYCETAKAVFKDLHKVPHVVELDQRDDGRAIQDALSALVGRHTVPQVFIDGKHIGGSDDTVEAYESGELGKLLGIK 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22657763 22660317 + Lsi06G012260.1 Lsi06g01226 665956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01226 124 PRINTS Glutaredoxin signature 99 112 IPR014025 -
Lsi06g01226 124 PRINTS Glutaredoxin signature 40 58 IPR014025 -
Lsi06g01226 124 PRINTS Glutaredoxin signature 85 98 IPR014025 -
Lsi06g01226 124 Pfam Glutaredoxin 41 102 IPR002109 -
Lsi06g01226 124 Gene3D Glutaredoxin 19 122 - -
Lsi06g01226 124 ProSitePatterns Glutaredoxin active site. 42 57 IPR011767 -
Lsi06g01226 124 PANTHER GLUTAREDOXIN 2 18 115 - -
Lsi06g01226 124 SUPERFAMILY Thioredoxin-like 31 121 IPR036249 -
Lsi06g01226 124 TIGRFAM GRX_euk: glutaredoxin 41 120 IPR011899 -
Lsi06g01226 124 ProSiteProfiles Glutaredoxin domain profile. 28 124 - -
Lsi06g01226 124 PANTHER BNAA02G04900D PROTEIN 18 115 - -
Lsi06g01226 124 CDD GRX_GRXh_1_2_like 41 120 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01226 Lsi11g00788 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00629 Lsi-Chr1:5054527 Lsi06g01226 Lsi-Chr6:22657763 3.02E-36 dispersed
Lsi02g00382 Lsi-Chr2:3292955 Lsi06g01226 Lsi-Chr6:22657763 2.54E-16 dispersed
Lsi06g01226 Lsi-Chr6:22657763 Lsi05g00883 Lsi-Chr5:15303561 1.63E-14 dispersed
Lsi11g00850 Lsi-Chr11:10719715 Lsi06g01226 Lsi-Chr6:22657763 3.39E-09 dispersed
Lsi06g01226 Lsi-Chr6:22657763 Lsi02g01578 Lsi-Chr2:21683092 9.55E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01226 K03676 - csv:101205594 220.32