Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01229 ATGGAAGATCATCAAGATGAAGTTTGCAATATCAGCTGGCTTAGCCTTGGCTTGGGATTTGGTGAATATCCCCCAAAAAAGATGCAAAAAATCAACAATAAGCAACAACAACTCTCTTTCACTCTCATTCCAAAAGAAGAATTGGGTATTAACAACAACAACAACAACAACAATATGGAAATTGTTGAAGCAAATTCAAGTGAAGAAGATGATGATGATCATCATTTGAGGAAGAGAATTAGAAGCAACAATAATAATATTGTTAGTTATGATCAAGATTCCTCCTTTGGAATTAGAACATCATCATCAGATCATAATCATCATCACTACAACAACAACAACAACAACAATATTATTACTACTAATCATAATTACAAGGGGATTAGTAGTAGTAGTGCATCAGAATTAAGGGAGAGAAAAAAGCTTAGGCTTTCCAAAGAACAATCCACTTTGCTCGAAGAAAGCTTCAAACTTCATACCACCTTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACAGAAGTAGATTGCGAGTTCTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAATCGAAGGATGAAGAAAGAATTGAATGAATTAAGATCCCTTAAACTTGGAGCTTCACAATTGTACATTCAGCTGCCCAAGGCGGCGACCCTCACAATTTGCCCTTCATGCGACAAAATTACCAGGACGGCCGCCGCCGTCGACGCCAATTCTCCGCCTCAATAA 807 37.79 MEDHQDEVCNISWLSLGLGFGEYPPKKMQKINNKQQQLSFTLIPKEELGINNNNNNNNMEIVEANSSEEDDDDHHLRKRIRSNNNNIVSYDQDSSFGIRTSSSDHNHHHYNNNNNNNIITTNHNYKGISSSSASELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRMKKELNELRSLKLGASQLYIQLPKAATLTICPSCDKITRTAAAVDANSPPQ 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22684196 22685969 + Lsi06G012290.1 Lsi06g01229 665959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01229 268 PANTHER - 10 257 - -
Lsi06g01229 268 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Lsi06g01229 268 MobiDBLite consensus disorder prediction 66 93 - -
Lsi06g01229 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 10 257 - -
Lsi06g01229 268 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Lsi06g01229 268 Coils Coil 194 231 - -
Lsi06g01229 268 Gene3D - 143 193 - -
Lsi06g01229 268 SMART HOX_1 137 199 IPR001356 GO:0003677
Lsi06g01229 268 Pfam Homeobox associated leucine zipper 195 228 IPR003106 GO:0006355|GO:0043565
Lsi06g01229 268 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Lsi06g01229 268 SUPERFAMILY Homeodomain-like 127 196 IPR009057 -
Lsi06g01229 268 CDD homeodomain 139 196 IPR001356 GO:0003677
Lsi06g01229 268 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01229 Lsi-Chr6:22684196 Lsi07g01279 Lsi-Chr7:18633125 5.72E-54 dispersed
Lsi06g01229 Lsi-Chr6:22684196 Lsi01g00857 Lsi-Chr1:6862407 1.20E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25521 PF00046 Homeodomain 9.90E-16 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01229 K09338 - csv:101203427 372.474