Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01232 ATGTTTTGCAGGCCAACTCAGGGATGCCTCGCCGAATACTTCAAGGGAACACTAGAAGATGGAAGATTGGTTGCAATTAAGAAACTTTCACTTAACAAATCCCAACAGGGAGAACCAGAATTTCTATCAGAGGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGCCTGCTTGGTTGTTGCTCCGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAATAGGAGTTTAGATCTCATAATCTATGGTGGAAGTGACCAAATCCTCAACTGGAACACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTATCTACATGAGGATTCCCATCTAAGAATTATTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGATGACAAATTTCAACCGAAGATTGGTGATTTTGGCCTGGCCAGGTTCTTCCCTGATGACCAAGCTTACCTAAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCGGAATATGCAATTAGGGGAGAACTGTCAGAGAAGGCAGATGTATACAGTTTTGGAGTCCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGGTCTGCACTAATCGAACTTGTGGATCCAAAGATGAAGGAGGGTGGATATTTGGAGAAGAATGTAGTACATGCAATTCAGGTTGCTTTGTTATGCCTTCAACCTCATGACAATCTAAGACCTGCAATGTCTGAGATTGTTGCCATGTTAACATACAAGTTTGAAATTGTTCAAACGCCTTTGAAACCAGCTTTCTTGGAAAGAAGGCATAAAAGGAATAGAGATATCTCGTTGACTAATAATGCAGATACTACTCCATCTCCTTTACAGTAA 933 41.59 MFCRPTQGCLAEYFKGTLEDGRLVAIKKLSLNKSQQGEPEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSDQILNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSALIELVDPKMKEGGYLEKNVVHAIQVALLCLQPHDNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHKRNRDISLTNNADTTPSPLQ 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22704046 22706087 + Lsi06G012310.1 Lsi06g01232 665962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01232 310 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 7 293 - -
Lsi06g01232 310 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 7 293 - -
Lsi06g01232 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lsi06g01232 310 Pfam Protein tyrosine and serine/threonine kinase 10 269 IPR001245 GO:0004672|GO:0006468
Lsi06g01232 310 Gene3D Phosphorylase Kinase; domain 1 6 76 - -
Lsi06g01232 310 CDD STKc_IRAK 7 271 - -
Lsi06g01232 310 SUPERFAMILY Protein kinase-like (PK-like) 8 271 IPR011009 -
Lsi06g01232 310 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01232 310 Gene3D Transferase(Phosphotransferase) domain 1 77 279 - -
Lsi06g01232 310 SMART serkin_6 7 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01232 Lsi-Chr6:22704046 Lsi11g01613 Lsi-Chr11:24461212 2.83E-92 dispersed
Lsi06g01232 Lsi-Chr6:22704046 Lsi04g00566 Lsi-Chr4:5175720 1.66E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83737 PF07714 PK_Tyr_Ser-Thr 3.90E-43 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01232 - - csv:101203677 573.933