Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01233 ATGTACATTATCGTAACTGTTAGATGCATGTTATCGGTTCGCTCCAACCCGATTCGGTCCTCGAGATTGAGCATCGGGGGGAAGAAAAGCCCCCAACATCAGTCACGTGCTAGGCTACCTCCCGGACCCACATTCACTTCTGCCACGTCACCATCCCTTCTTCTACCGTACATGGGCACCCTTCCCAATCGCTTCTCCTTCTCCTTCTCTCTCTTCTCTCTAATTTTTCTCTTCACTGCCGTCTCACCGGCAACTGCTACAGCCGGCGACCGACCTCTAAAGCTTACCCTACCTCACCCTTTTCTGTATCGTTTCAAGGCCTTAAAGGAAACTGTTTTTGTTGCTTCTCCTTCTCCACCGCCACCGCCGTCGTTTACCTCTGCTCCTCCTCCCGAGGAGAAGCCGGTGTACTCTTCATTCCGGCCAAGCATGGCGGTGGTGGTGGGTGTTCTGACTACCACTTTCTCCATCACGTTTCTTCTCCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGTGGTGGTTGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGTTGCCGATTTTCCGATTTGGGTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCCGTTTGTCTCAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTCCCGAAATGCAAACACGCGTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCCCACTCCACTTGCCCTCTCTGTCGCTACAGAGTTGACCCAGAGGACGTCTTATTATTCGAAGACGTGAATATATTTCTCCACAACCCACCACCTCCGCCGCCGCGGGAATCGAATTCCAAGGATGTTGTGTTGAACTTAGAACAGGGGAGAAGAAGTGGGAAGGCTGGATCCGGGAGAGTCTCCGGCAGACACTCATCCGTCGGCGAGAAAAGAACAGGGGAGTCCAGTTACCGTGATCCGGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTAGCTGTCGGATGCTTCGATCGGCACCGGAAGGACGGGCTACTTTTGCCGGAGGAAAAAACAAATCAGAATCAGAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCACCGAGGCCGCCGGTACTGGTACAGGGGCAACAGAGATGGAGCGATGTACAAGCTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCTGACAGCCGCAGATTTTCGGCAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGTCCGGGATGATGATGATGATGGCAGATGTGTAA 1389 52.63 MYIIVTVRCMLSVRSNPIRSSRLSIGGKKSPQHQSRARLPPGPTFTSATSPSLLLPYMGTLPNRFSFSFSLFSLIFLFTAVSPATATAGDRPLKLTLPHPFLYRFKALKETVFVASPSPPPPPSFTSAPPPEEKPVYSSFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAVVVGYSMRPNTMMGVPSFSTRKNSGIDQAVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLFEDVNIFLHNPPPPPPRESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVAVGCFDRHRKDGLLLPEEKTNQNQNQNQNRLEHRIIVSPRPPVLVQGQQRWSDVQASDLLYLRSEMIISDSRRFSAASLPPELKRQRRMGMMGKHAGKGSGMMMMMADV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22715226 22717044 - Lsi06G012330.1 Lsi06g01233 665963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01233 462 MobiDBLite consensus disorder prediction 22 44 - -
Lsi06g01233 462 CDD RING-H2_EL5_like 223 266 - -
Lsi06g01233 462 MobiDBLite consensus disorder prediction 322 339 - -
Lsi06g01233 462 SUPERFAMILY RING/U-box 204 271 - -
Lsi06g01233 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 273 IPR013083 -
Lsi06g01233 462 ProSiteProfiles Zinc finger RING-type profile. 224 266 IPR001841 -
Lsi06g01233 462 MobiDBLite consensus disorder prediction 306 339 - -
Lsi06g01233 462 Pfam Ring finger domain 223 266 IPR001841 -
Lsi06g01233 462 PANTHER RING-H2 FINGER PROTEIN ATL43 115 442 - -
Lsi06g01233 462 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 115 442 - -
Lsi06g01233 462 SMART ring_2 224 265 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi06g01233 Lsi11g00720 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00828 Lsi-Chr6:17610309 Lsi06g01233 Lsi-Chr6:22715226 2.30E-52 dispersed
Lsi06g00829 Lsi-Chr6:17612827 Lsi06g01233 Lsi-Chr6:22715226 7.71E-46 dispersed
Lsi06g01233 Lsi-Chr6:22715226 Lsi11g00524 Lsi-Chr11:5546761 1.03E-28 dispersed
Lsi06g01233 Lsi-Chr6:22715226 Lsi09g01100 Lsi-Chr9:17598438 1.98E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01233 K19041 - csv:101203916 605.134