Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01255 ATGGCACGCCCATCTACGCCTACGCCGCCGCCGCCGCCCACCACCGCCTTCATTCTCATTCTCATTCTCATTTCATTGGAGCTCATTGTTTCTTTGAGTGCTGCTACCGATGCAGAAGCGCTTCTTAAGTTCAAGGGCTCTCTTGAAATTACCAATAATGCGTTGGGGAATTGGGCTACAGGGTCTTCCCCTTGCTCTGGCGATAAGGCGAATTGGGTCGGTATTCTTTGCGAGAAGGGAAATGTTTGGGGATTGAAGCTTGAGAATATGGGGCTCAAGGGCAATATTGATATTGAGTCCCTTGAAGGGGTGCCTCATTTAAGGACAATTAGTCTTATGAACAATGAATTTGAAGGATCTTTGCCTGATGTCAAGAGACTTGGGGCATTAAAATCTTTGTATTTGTCAAGGAATCATTTCTCAGGGAACATTCCTGGGGATTCATTTTCAAGTATGTTGTCTTTGAAGAAGGTGCATTTGGCTCAAAACCAATTGGAGGGTCGAATTCCTTGGTCCTTGGTTGAGTTGCCTCGCTTGTTGGAGTTGAGGCTTGAAGGAAATAAGTTTTCTGGCCAAATTCCTAATTTCCAACAGAAGACATTCAAGTCCTTTAATGTCTCTAATAATGATCAACTTCATGGCCCAATCCCACAAACCCTCTCCCACATGGATCCATCCTCCTTTTCAGGCATTGAAGGTTTATGTGGAGCCCCACTTAATAAACCATGCAATGCCACAAAGATGCCATCAATTGGGAGCATTATCATGGTTTCAATAGCTGTGACATTGGCTCTGCTTGCCATTGGTGCAGGAATAGTCATCCTTAGCCGTCGGAACCAATCATCGTCTAGTGGAGAGGATCCAGCCCACGGCAAATCTCCATGTGCTAGTGAGTTAGATCCGGGAGTTGGGTCGAGGTCACCGGACCGTGGCTCCAGCCATGGAAGCGGGTCAGGGAAACGGTCAGCCGAGAGTGCTAAATTGTCATTTGTAAGAGAGGACTCAGAGAGGTTTGATTTATCAGATTTGCTTAAAGCCTCTGCAGAAATCCTAGGAAGTGGATGCTTTGGTTCTTCTTACAAAGCAGCCTTGACCAATGGACCTGTCATGGTGGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAGAGAGGAATTCCAAGAACATATGAGAAGAATTGGAAGATTGAAACACGCCAACTTGCTTCCTCTTGTGGCCTACTACTACAAAAAGGAAGAAAAGCTTCTTATAACAGACTATGTTGAGAAGGGCAGCTTGGCTGTCCAACTTCATGGACACCAAGCTGTGGGTCAACCAGCCCTGGATTGGCCTGCAAGGTTGAAGATCATCAAGGGCGTTGGAAAGGGTCTTCGGTATCTGTACAGTGAGCTTCCAAGTTTGATAACCCCACATGGCCATCTCAAGTCCTCAAATGTGCTTCTGAAGGCAAATTATGAGCCACTTCTTTCGGACTATGGCCTGATCCCGGTCGTGAACCAAGAGCACGCTCATGAGCTAATGGTGGCCTACAAATCGCCGGAGTACTCGCAACAAGGTCGCATTACAAAGAAGACAGATGTGTGGAGCTTTGGGCTGTTGATCCTAGAGATCCTAACAGGGAAATTCCCAGCAAACTTTCTGCATTCGAAAAAGAGTGGAGATGAGGAAGATTTGGCAAGTTGGGTGAAAACCATTCCTGAAAAAGATTGGAACAGCCAAGTATTTGATAAGGACATGGGGCCAACCAAGAACAGTGAGGGCGAAATGATGAAGCTTCTAAGGATTGCAATGGCGTGTTGCGAAAGCGACTTCGAGAAGCGGCTGGATTTACGAGAAGTTGTGGACAAGATTGAGGAAGTAAAAGAAAAAGATGGGGATGAAGATTTCTATTCTTCATATGCCAGTGAAGCTGATATTAGATCTTCAAGAGGATTATCTGATGAACTCAACTTCACCATGTGA 1962 45.62 MARPSTPTPPPPPTTAFILILILISLELIVSLSAATDAEALLKFKGSLEITNNALGNWATGSSPCSGDKANWVGILCEKGNVWGLKLENMGLKGNIDIESLEGVPHLRTISLMNNEFEGSLPDVKRLGALKSLYLSRNHFSGNIPGDSFSSMLSLKKVHLAQNQLEGRIPWSLVELPRLLELRLEGNKFSGQIPNFQQKTFKSFNVSNNDQLHGPIPQTLSHMDPSSFSGIEGLCGAPLNKPCNATKMPSIGSIIMVSIAVTLALLAIGAGIVILSRRNQSSSSGEDPAHGKSPCASELDPGVGSRSPDRGSSHGSGSGKRSAESAKLSFVREDSERFDLSDLLKASAEILGSGCFGSSYKAALTNGPVMVVKRFKQMNNVDREEFQEHMRRIGRLKHANLLPLVAYYYKKEEKLLITDYVEKGSLAVQLHGHQAVGQPALDWPARLKIIKGVGKGLRYLYSELPSLITPHGHLKSSNVLLKANYEPLLSDYGLIPVVNQEHAHELMVAYKSPEYSQQGRITKKTDVWSFGLLILEILTGKFPANFLHSKKSGDEEDLASWVKTIPEKDWNSQVFDKDMGPTKNSEGEMMKLLRIAMACCESDFEKRLDLREVVDKIEEVKEKDGDEDFYSSYASEADIRSSRGLSDELNFTM 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23134337 23138284 - Lsi06G012550.1 Lsi06g01255 665985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01255 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 631 - -
Lsi06g01255 653 ProSiteProfiles Protein kinase domain profile. 345 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01255 653 MobiDBLite consensus disorder prediction 280 327 - -
Lsi06g01255 653 Gene3D Ribonuclease Inhibitor 34 235 IPR032675 -
Lsi06g01255 653 Pfam Leucine rich repeat 130 189 IPR001611 GO:0005515
Lsi06g01255 653 MobiDBLite consensus disorder prediction 309 323 - -
Lsi06g01255 653 SUPERFAMILY L domain-like 35 223 - -
Lsi06g01255 653 SUPERFAMILY Protein kinase-like (PK-like) 349 618 IPR011009 -
Lsi06g01255 653 Gene3D Transferase(Phosphotransferase) domain 1 421 639 - -
Lsi06g01255 653 Pfam Protein tyrosine and serine/threonine kinase 349 616 IPR001245 GO:0004672|GO:0006468
Lsi06g01255 653 Pfam Leucine rich repeat N-terminal domain 35 77 IPR013210 -
Lsi06g01255 653 Gene3D Phosphorylase Kinase; domain 1 312 420 - -
Lsi06g01255 653 PANTHER POLLEN RECEPTOR-LIKE KINASE 5 15 631 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01255 Lsi-Chr6:23134337 Lsi08g01116 Lsi-Chr8:19798175 9.86E-170 dispersed
Lsi06g01255 Lsi-Chr6:23134337 Lsi04g02208 Lsi-Chr4:29120184 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83738 PF07714 PK_Tyr_Ser-Thr 2.20E-30 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01255 - - csv:101213261 1099.73