Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01272 ATGGCGTTCGTTGGGTTTATTGGCTTGGACGATTTGAGCCTCGAATTGGCTACTTCACTAATCCGTGCCGGTCACAGAGTCAAAGCTTTTGAGACAAATCAGGCCTGGACAGATAAATTTTTGAAGTCGGGCGGAATAAACTGTGCCAGTATTGTAGAGGCAGGGGAAGATGTTGCCGCATTGCTTGTACTGAATAGTCATTTGAATATGATTAATGATTTATCTTTTGTCGATGTTCTCAGAGGGTTGCATAAGGATGTTGTTGTTGTCCTTGTCCGTTCAACTCCACTGGGGAATGATGTCCGGAACTTGGAAAAACTTTTTACAGTTGATTACGAGATGCACAATCTTGTTGAAGCATATATCTTTAAGGGTGTTTCTGAAGCTCTGGATGGTCAGCTCTTGACAGTAACCTCTGGAAGGGCAGCTGCAATTTCTAGAGCTCGACCTTTTCTATCAACTATGTGTGGAAAGCATTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAAAGCAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCGCTGGAAGCTATTTCCCTGGGTGTTAAAGCTGGAATTCACCCCTGGATAATCTATGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATTATGTTCCCCACTTGTTAAAGGGTGATATTAGACCTGAGTTGTTGAGAAGTTTGGTTCAAGCTATGGGGATTGTCATGGATAAGGCCAAGTCGCACACTTTTCCTCTTCCACTCCTAGCAGTTACTCATCAGCAACTTATGCTGGGTTCTTCTCACGGCTATGGAGATGAGGATGGCTTGTTAGAACAGGCATGGAAAAGTGCATATGGAGTAAGTATTTCAGATGCAGCTAATGCAGAAGTTTACAGCCCTGAGCAACTAGCTAATGAAATAACTTCTAAATCACGTTCTGTTAAACGAGTGGGTTTCATTGGTCTTGGTGCAATGGGATTTGGCATGGCAACTCACCTTATCAGATCAGATTTTTGTGTGATTGGTTATGATGTGTTTAAACCAACCCTAGCTAAATTCACTAATGCTGGTGGCTTGATTGGAAATTCGCCTCCAGAAGTTAGTAAAGATGTTGAAGTGCTCGTAATTATGGTGACAAATGAAGCACAAGTGGAGAACGTTCTGTATGGGGAAGCTGGGGCTATCTCTGCCCTTCCATATGGAGCTTCGATTATTCTATCATCTACTGTTTCTCCCGGATATGTGAGCCAACTAGAACAACGCTTGGGAAATGAGGGCAAAAATTTGAAATTGGTTGATGCTCCCGTTTCTGGTGGTGTTCAAAGGGCCTCAAAGGGAGCCCTTACGATAATGGCTTCTGGGACAAATGAAGCTCTTAGGAGCGCTGGTTCAGTCCTCTCAGCCTTAAGTGAGAAGCTTTATGTAATTAAAGGAGTTTGCGGGGCGGGAAGTGGTGTGAAAATGGTAAATCAATTGCTTGCTGGAGTTCATATAGCATCGGGTGCAGAGGCAATGGCATTTGGAGCTCGCCTTGGTCTCAATACTCAAATTTTATTTGACGTCATCCTAAATAGTCCGGGAACGTCCTGGATGTTTGAAAACCGAGTTCCACATATGCTGGACGACGATTATACACCATACTCTGCACTTGACATCTTTGTGAAGGACCTGGGCATTGTTTCTCGGGAATGTGCATCTCATAAAGTTCCTCTACACTTATCCGTGACTGCACATCAATTGTTTGTGGCAGGTTCTGCTGCGGGTTGGGGTCGGCAAGATGATGCTGGAGTAGTAAAGGTTTATGAGACGCTTACAGGTGTCAAGGTTAAAGGAAAGCGTCCCACTCTTAAGAAAGAAGTTGTATTGAGGTCTCTTCCACCTGAATGGCCGGAAGATGTAATTGCTGATATTCAACAACTAAATGAAAGAAATTCAAAATTTTTGGTTGTGCTGGACGATGATCCTACGGGAACTCAAACTGTTCACGATGTTGATGTTTTAACTGAATGGACCCTCGATTCACTTATTGAGCAATTTCATAAAAAGCCCAAATGCTTTTTTATACTGACCAACTCAAGGTCACTGAGCTCTGAAAAGGCTGGGGCATTAGTTGAACAAATCTGCAATAATTTACGTGCTGCATCTGAGAGTGTCAAACATAGTGACTACATGGTAGTTTTGAGAGGTGATTCAACCTTACGAGGTCATTTTCCCGAGGAAGCCGATGCTGCCATGTCAGTGTTAGGTGTAGTGGATGCATGGATCATCTGCCCATTCTTTTTCCAAGGTGGCCGTTACACTATTGACGATATACACTATGTTGCAGATTCTGATGAGCTCATTCCTGCGGGGGACACTGAATTCGCAAAAGATGCTACTTTTGGTTATAAATCTTCAAATCTTCGTGAGTGGGTTGAAGAGAAAACAGCTGGGCGCATACAAGCTGGCACTGTTGCATCCATTTCTATTCAACTTTTAAGAAAGGGTGGCCCAGATGCTGTTTGTGAGCACCTATGTAGCTTAGAGAAGGGAATGACATGTATAGTTAATGCCGCTAGTGAAAGGGATATGGCCGTCTTTGCAGCTGGAATGATCAAGGGCAAGAATTTCTTGTGCCGAACTGCTGCCAGTTTTGTATCAGCCAGAGTTGGGATCACTCCAATAGCTCCTCTTTTGCCAAAGGATGTTGGGATCGATAAAGAGAGAAATGGCGGTCTTATAATTGTGGGTTCATATGTTCCAAAAACTACTAAACAGGTTCAAGAGCTGAAGTTGCGATGTGGCCCATTTTTAAGATGTATTGAGGTTTCAGCTGCTAAACTTTCCATGAGTACAGAGGAAGAGAGGGAGGAGGAAATTAGAAAAGCAGCTATGTTTGCAGATATTTATCTCAGGGCCCATAAAGATACTCTCATTATGACTAGTAGAGAACTTATCACGGGAAAAAGTCCTCTGGAGAGTTTAGAAATCAACGTCAAAGTAAGTGCGGCACTGGTAGAAATAGTTCAACGGATTACTACAAAACCTCGCTACATCCTTGCAAAGGGTGGAATTACCTCATCAGACATTGCTACAAAGGCTCTTGGAGCAAGATGTGCTAGGATAATTGGACAGGCCCTCTCTGGGGTTCCCTTGTGGCAACTAGGCCATGAAAGTAGACATCCTGGAGTTCCGTACATTGTTTTCCCAGGTAATGTTGGAAGCAGTGAAGCACTAGCAGAAGTAGTCAGTACTTGGGCTCTTCCTGCCGGACTTTCCTCTTCAAAAGAGATTCTTCTTAGTGCAGAACGAGGTGGGTATGCAGTGGGAGCTTTCAATGTCTATAATTTGGAAGGAGTTCAGGCTGTTGTTGCTGCTGCTGAAGAACAACAGAGTCCTGCCATATTACAGATCCATCCAGGTGCCTTAAAGCAAGGAGGGCTCTCTTTGGTTTCATGCTGTATTGCTGCTGCTGAACGAGCCAGTGATGTGGTTTTTAGTTCTAAGTGTACATTGAATATTCCTGAACTATTACAGGTACCAATTACTGTTCACTTTGATCACGGAAATTCAATGCAAGATCTATTAGAAGCTGTTGAATTGGGATTTGATTCAGTAATGGCAGATGGTTCTCATCTTCCATTTAAGGAAAATATTGCCTACACAAAGTTCATTTCTTCCTTGGCTCAATCAAAGAACATGCTAGTGGAAGCTGAACTTGGAAGATTATCCGGAACAGAAGATGACTTGACTGTCGAAGATTATGAAGCAAGGCTGACCGATGTTTCGCAGGCTCAACAGTTTATTGAGGAGACTGGTATAGATGCTCTAGCAGTGTGCATTGGTAATGTCCATGGAAAATATCCGCCAAGCGGCCCGAATCTCAGACTCGATCTGCTCAAGGACTTGCATGCTTTGACCTCAAAAAAAGAAGTCTTCCTGGTGCTGCACGGAGCTTCAGGTTTACCTGAGAGCCTCATAAAGGCTTGCATCGAGAATGGAGTGAGAAAGTTCAACGTAAACACTGAGGTTCGGAAAGCATACTTGGATTCACTGAATAGCCCCAGCAAAGATTTAGTCCATGTGATGGAATCAGCCAAAGAATCCATGAAAGCTGTGATTGCAGAGAAGATGCATCTATTTGGCTCTGCAGGAAAAGCATTCTGA 4158 43.22 MAFVGFIGLDDLSLELATSLIRAGHRVKAFETNQAWTDKFLKSGGINCASIVEAGEDVAALLVLNSHLNMINDLSFVDVLRGLHKDVVVVLVRSTPLGNDVRNLEKLFTVDYEMHNLVEAYIFKGVSEALDGQLLTVTSGRAAAISRARPFLSTMCGKHFIFEGEVDAGSKANMVIELLKGIHFVASLEAISLGVKAGIHPWIIYDIISNAAGNSWVFKNYVPHLLKGDIRPELLRSLVQAMGIVMDKAKSHTFPLPLLAVTHQQLMLGSSHGYGDEDGLLEQAWKSAYGVSISDAANAEVYSPEQLANEITSKSRSVKRVGFIGLGAMGFGMATHLIRSDFCVIGYDVFKPTLAKFTNAGGLIGNSPPEVSKDVEVLVIMVTNEAQVENVLYGEAGAISALPYGASIILSSTVSPGYVSQLEQRLGNEGKNLKLVDAPVSGGVQRASKGALTIMASGTNEALRSAGSVLSALSEKLYVIKGVCGAGSGVKMVNQLLAGVHIASGAEAMAFGARLGLNTQILFDVILNSPGTSWMFENRVPHMLDDDYTPYSALDIFVKDLGIVSRECASHKVPLHLSVTAHQLFVAGSAAGWGRQDDAGVVKVYETLTGVKVKGKRPTLKKEVVLRSLPPEWPEDVIADIQQLNERNSKFLVVLDDDPTGTQTVHDVDVLTEWTLDSLIEQFHKKPKCFFILTNSRSLSSEKAGALVEQICNNLRAASESVKHSDYMVVLRGDSTLRGHFPEEADAAMSVLGVVDAWIICPFFFQGGRYTIDDIHYVADSDELIPAGDTEFAKDATFGYKSSNLREWVEEKTAGRIQAGTVASISIQLLRKGGPDAVCEHLCSLEKGMTCIVNAASERDMAVFAAGMIKGKNFLCRTAASFVSARVGITPIAPLLPKDVGIDKERNGGLIIVGSYVPKTTKQVQELKLRCGPFLRCIEVSAAKLSMSTEEEREEEIRKAAMFADIYLRAHKDTLIMTSRELITGKSPLESLEINVKVSAALVEIVQRITTKPRYILAKGGITSSDIATKALGARCARIIGQALSGVPLWQLGHESRHPGVPYIVFPGNVGSSEALAEVVSTWALPAGLSSSKEILLSAERGGYAVGAFNVYNLEGVQAVVAAAEEQQSPAILQIHPGALKQGGLSLVSCCIAAAERASDVVFSSKCTLNIPELLQVPITVHFDHGNSMQDLLEAVELGFDSVMADGSHLPFKENIAYTKFISSLAQSKNMLVEAELGRLSGTEDDLTVEDYEARLTDVSQAQQFIEETGIDALAVCIGNVHGKYPPSGPNLRLDLLKDLHALTSKKEVFLVLHGASGLPESLIKACIENGVRKFNVNTEVRKAYLDSLNSPSKDLVHVMESAKESMKAVIAEKMHLFGSAGKAF 1385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23299461 23317888 + Lsi06G012720.1 Lsi06g01272 666002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01272 1385 ProSitePatterns 3-hydroxyisobutyrate dehydrogenase signature. 323 336 IPR002204 GO:0016491
Lsi06g01272 1385 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 168 278 IPR008927 -
Lsi06g01272 1385 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 320 478 IPR006115 GO:0050661
Lsi06g01272 1385 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 4 158 IPR006115 GO:0050661
Lsi06g01272 1385 Gene3D Aldolase class I 1086 1385 IPR013785 -
Lsi06g01272 1385 PANTHER ALDOLASE-RELATED 4 278 - -
Lsi06g01272 1385 PANTHER ALDOLASE-RELATED 283 1310 - -
Lsi06g01272 1385 SUPERFAMILY YgbK-like 652 1080 - -
Lsi06g01272 1385 TIGRFAM cbbA: ketose-bisphosphate aldolase 1090 1384 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lsi06g01272 1385 SUPERFAMILY Aldolase 1091 1384 - -
Lsi06g01272 1385 Gene3D - 651 887 IPR037051 -
Lsi06g01272 1385 Gene3D - 482 614 IPR013328 GO:0016491
Lsi06g01272 1385 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 485 612 IPR008927 -
Lsi06g01272 1385 Pfam Sugar-binding N-terminal domain 652 885 IPR010737 -
Lsi06g01272 1385 Gene3D - 900 1082 IPR042213 -
Lsi06g01272 1385 Gene3D - 2 164 - -
Lsi06g01272 1385 Gene3D - 313 481 - -
Lsi06g01272 1385 Gene3D - 168 283 IPR013328 GO:0016491
Lsi06g01272 1385 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 278 IPR029154 GO:0051287
Lsi06g01272 1385 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 485 605 IPR029154 GO:0051287
Lsi06g01272 1385 CDD TBP_aldolase_IIB 1093 1382 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lsi06g01272 1385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 159 IPR036291 -
Lsi06g01272 1385 Pfam Nucleotide-binding C-terminal domain 910 1076 IPR031475 -
Lsi06g01272 1385 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 4 278 - -
Lsi06g01272 1385 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 283 1310 - -
Lsi06g01272 1385 Pfam Fructose-bisphosphate aldolase class-II 1092 1383 IPR000771 GO:0005975|GO:0008270|GO:0016832
Lsi06g01272 1385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 319 478 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01272 - - - bhj:120070914 2520.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01272 Lsi-Chr6:23299461 Lsi11g00223 Lsi-Chr11:2280202 2.14E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009138 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01272 Lsi_Chr06 FPKM 6.063664 7.955556 4.188518 3.921741 13.307236 11.677488 12.630024 3.83544 4.247036 4.294419