Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01274 ATGGGTATTCCAATGGCGGATCAGACTCAGAAACCCGAGCTTTTCGAACTCAACAATGGAACCATGCAGGTTCTCATTTCCAATCTTGGTTGCACCATCACTTCTCTCTCTGTTCCAGACAAAGACGGAAAATTGGCTGATGTAGTTCTTGGATTTGATTCTCTCGACCCGTATTTGTTCGATCGTTCTATATCCGCGATTCAAATGGTTCTGGATATCTCGGAATTGACGGAATTGTGGGGTTTAAATGGCATGCATAAAGGTCTTGCGCCTTATTTTGGCTGCATTGTCGGTCGAGTCGCTAACAGAATCAAAGATGGGAAGTTCACACTCAATGGGGAACAATACTCTCTGCCTATTAACAAACCTCCAAATAGTCTCCATGGTAAGGAATTGGGAATTTTCGTAGGTGGGCACAAAGGATTTGACAAGAAAGTATGGCAAGTGAGTGAATACAAAAAGGGGGAGAATCCATCCATCACCTTTAACACAACAATGAAACTTGATATGGAGGCAATTCCTGACAACAAGCCCACCATAATCAACTTGGCTCAACACACCTACTGGAACTTAGGTGGGCATAACTCGGGGGATGTTCTCAACCATTCAATTCAACTTTGGGCAAACCATATTACTCCAGTTGACGAGAACACTGTCCCGACCGGAGAAATCTTGCCCGTCAAAGGCACCCCTTTCGATTTCACTTCTGAAAAGAAGATAGGTACCTCTATTCATGAGGTTGGCATGGGATACGACCACAATTATGTTCTTGACTGTGGAGATGAAAAATTGGGTCTGAAGCATGTTGCAAAAGTGAAGGAACCATCGAGTGCTAGGGTCCTGAACTTGTGGACCAATGTCCCTGGAGTGCAGTTTTACACAGGTAACTATGTCAATGGTGTTGATGGCAAAGGAGGGGCTGTTTATGGTAAGCATGCAGGTCTTTGTTTGGAGACACAAGGATTTCCCAATGCAGTGAATCAACCCAACTTCCCATCTGTTGTCGTTAAACCTGGTGAGAAGTATCAGCACACTATGCTATTTGAGTTTTCAGTTGAATAG 1062 43.97 MGIPMADQTQKPELFELNNGTMQVLISNLGCTITSLSVPDKDGKLADVVLGFDSLDPYLFDRSISAIQMVLDISELTELWGLNGMHKGLAPYFGCIVGRVANRIKDGKFTLNGEQYSLPINKPPNSLHGKELGIFVGGHKGFDKKVWQVSEYKKGENPSITFNTTMKLDMEAIPDNKPTIINLAQHTYWNLGGHNSGDVLNHSIQLWANHITPVDENTVPTGEILPVKGTPFDFTSEKKIGTSIHEVGMGYDHNYVLDCGDEKLGLKHVAKVKEPSSARVLNLWTNVPGVQFYTGNYVNGVDGKGGAVYGKHAGLCLETQGFPNAVNQPNFPSVVVKPGEKYQHTMLFEFSVE 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23319362 23323196 + Lsi06G012740.1 Lsi06g01274 666004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01274 353 PANTHER GALACTOSE MUTAROTASE-LIKE SUPERFAMILY PROTEIN 9 163 - -
Lsi06g01274 353 PANTHER GALACTOSE MUTAROTASE-LIKE SUPERFAMILY PROTEIN 164 352 - -
Lsi06g01274 353 CDD galactose_mutarotase_like 14 350 - -
Lsi06g01274 353 Gene3D - 164 353 IPR014718 GO:0030246
Lsi06g01274 353 Gene3D - 4 163 IPR014718 GO:0030246
Lsi06g01274 353 SUPERFAMILY Galactose mutarotase-like 86 351 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lsi06g01274 353 PIRSF GALM 4 67 IPR015443 GO:0016853|GO:0019318
Lsi06g01274 353 PIRSF GALM 161 353 IPR015443 GO:0016853|GO:0019318
Lsi06g01274 353 PIRSF GALM 70 169 IPR015443 GO:0016853|GO:0019318
Lsi06g01274 353 PANTHER ALDOSE-1-EPIMERASE 9 163 - -
Lsi06g01274 353 PANTHER ALDOSE-1-EPIMERASE 164 352 - -
Lsi06g01274 353 Pfam Aldose 1-epimerase 14 62 IPR008183 GO:0005975|GO:0016853
Lsi06g01274 353 Pfam Aldose 1-epimerase 163 348 IPR008183 GO:0005975|GO:0016853
Lsi06g01274 353 SUPERFAMILY Galactose mutarotase-like 9 61 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01274 K01785 galM, GALM; aldose 1-epimerase [EC:5.1.3.3] - csv:101222545 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01274 Lsi-Chr6:23319362 Lsi06g01477 Lsi-Chr6:25274243 1.83E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g191 . . . Bda15g00554 Bpe12g00654 . . . . . . Cma11g00318 . Car11g00293 Sed12g2124 . Cpe04g01364 Bhi02g00152 Tan09g1809 Cmetu02g1580 . Hepe09g0398 . . Cla06g01414 Cam06g1567 Cec06g1627 Cco06g1619 Clacu06g1529 Cmu06g1483 Cre06g2292 . . . Cone19ag0339 . . . . Blo13g00128 . . . . . . Bma08g00099 . . Cmo11g00323 . . . . . . . . . . . . . . . . . . . . Lsi06g01274 Csa01g00441 Chy02g02304 Cme02g01675
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011600 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01274 Lsi_Chr06 FPKM 59.664555 63.310905 0.548033 0.882851 2.985236 3.006536 2.132986 0.498828 0.678411 0.52777