Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01277 ATGGCAGCTCCAAAGTTCCTACACATCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCTCTCCTCTTCCCCAGAAGACTCCCGCCAAAGCTCATATCCTTCATAAAGTGCAGTTCTTCTACCGCGCTTGATTCCGCCGGCAGCGGCGGTGCTGATGCTCCCCAACCACACTCCACCCTCACTCACCACCCATGGCCTGAATGGGTTTCCTTCGTCGACGGCTTGAGGACTAAAGGTTACTTGATTGAACCTCCTTCAGAAGATGCAAACGGAGATGGGACCGGTGGTGATGCAGCTACACCATCCGTGACTGATTACAGCGACATGAACGTGTTGAAGGATGCTTGCGTCAGCTTTGCGCGCGATCGCTACGATATTTTCAAGTCATTGTACACAGATGATATTCAAACGATTGTGAAGGATGGATGTCCCAGTCTCTTCCGGAAAGTTGTTAATTCAGCTAAAAGGCTGAGGGCTTATGTGCAACTAGATGAAGGGGACGTTTGTAGTTCTTGCAACCTTCGAGGCTCCTGTGATAGAGCTTATGTTATCTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATATAGCTCGATTATTGTTGACCTATGCATTGGATCCACTTGTTTTGTCTGGAGGGGACAAACCTTCGGGTAGAGAGCATGTCGAAGTCTCTGTGAGGAAATTGCTTTCTGAGCTATTGGAACTGAGTGAAACCCCCCTTGATGCAGCAGCAGTGAAGGAGGAGACAAAATCTCCCCGAAGAAAAGAAAAACCATCAAAATTTACAAATGATGCCTCAACTCAAGATGTTGAGATGAAGAGAGGAGATTGGATGTGTTCAAAGTAA 861 47.5 MAAPKFLHIGTAISRTTSRALSPLLFPRRLPPKLISFIKCSSSTALDSAGSGGADAPQPHSTLTHHPWPEWVSFVDGLRTKGYLIEPPSEDANGDGTGGDAATPSVTDYSDMNVLKDACVSFARDRYDIFKSLYTDDIQTIVKDGCPSLFRKVVNSAKRLRAYVQLDEGDVCSSCNLRGSCDRAYVILKETEATARTVDIARLLLTYALDPLVLSGGDKPSGREHVEVSVRKLLSELLELSETPLDAAAVKEETKSPRRKEKPSKFTNDASTQDVEMKRGDWMCSK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23333679 23335077 - Lsi06G012770.1 Lsi06g01277 666007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01277 286 MobiDBLite consensus disorder prediction 248 286 - -
Lsi06g01277 286 PANTHER ASPARAGINE-RICH PROTEIN 43 286 - -
Lsi06g01277 286 PANTHER ZINC FINGER PROTEIN 43 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01277 - - - csv:101221680 462.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01275 Lsi-Chr6:23324605 Lsi06g01277 Lsi-Chr6:23333679 0 dispersed
Lsi06g01277 Lsi-Chr6:23333679 Lsi11g00571 Lsi-Chr11:6047397 4.23E-41 dispersed
Lsi06g01276 Lsi-Chr6:23329943 Lsi06g01277 Lsi-Chr6:23333679 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01277 Lsi_Chr06 FPKM 314.07489 320.450409 2.581762 3.150516 2.378252 2.426107 2.012862 16.016432 16.13504 13.067287