Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi06g01287 | ATGTCAACGCTAAAAGTTTCTAACTTTCTTCCTCTTTTGAGTGTCTTGTTCTTGAGAATGTGGACGTTGGGTTATGATGACAATGGCGGAGAATTTTGCTTCTCCGAAACCTTTAATGGCAGTCGCAAGCTTCGGCCTCTCGTCCCTCGCCCTTTGCCTTCCCTTCGTGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATTTCGCTAATCTTTTTAATGAGCAAAACAAGAGAGAGTTGATGAATAATGAAAAGAGTTCATCAAGTCCAACACCGGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGAGGGACAAGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAACTCCGCCGTTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAACGTCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGATAATGTCAACACAGAATCAGAAAAAGGGTACGAAATTAAAGAGACAAAGACGAAGAACAGGTGGGGAAGGCCAACACCACCACCCTCTATAATCTCCTCTACTCTACTTTCACAGGTCTCTTTCTTTCTCTCTCTACTTTCTCTCTCCTATTTTACCCTTCAATTAAATTCAATTAAATTAACCCATTTCCTATTTTTCAAAACCCACATGAAAACAAATGAAATCAGAATCTTCCCCATGCAGGAATGTGCAGAACCACAGAGAACAACAAAAGTTGTTGAATTGGAACAAGAAGAAGAAGAAGAACAAGAAACAATAACAGAGTCGTTGGAAAGAGATGGAACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACGGTGTCGTCGAATCCCGCAACGGAGACCGACGACGCAATGTCATTGACAACAATGACGTCCACAACAATGGCAAAGAAGAATCTAAAACAATGACACTTCAGTTGTTTCCTCTCCGCAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGGCGGCGAGATGATCGACCGGAGATCGATTCCGACATGATTAAAAGCTCCACCTTGTCTCCAAATTGTAGTTTACAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA | 1191 | 42.23 | MSTLKVSNFLPLLSVLFLRMWTLGYDDNGGEFCFSETFNGSRKLRPLVPRPLPSLRANGANFSSQYYHFANLFNEQNKRELMNNEKSSSSPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSDNVNTESEKGYEIKETKTKNRWGRPTPPPSIISSTLLSQVSFFLSLLSLSYFTLQLNSIKLTHFLFFKTHMKTNEIRIFPMQECAEPQRTTKVVELEQEEEEEQETITESLERDGTWNYNNILNCQLINPTRKTQHLNGVVESRNGDRRRNVIDNNDVHNNGKEESKTMTLQLFPLRSTKFYKYDSEREGRRDDRPEIDSDMIKSSTLSPNCSLQFFEFLPLKN | 396 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23429509 | 23434309 | - | Lsi06G012870.1 | Lsi06g01287 | 666017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi06g01287 | 396 | MobiDBLite | consensus disorder prediction | 157 | 198 | - | - | |
Lsi06g01287 | 396 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 65 | 396 | IPR044555 | GO:0003700|GO:0099402 | |
Lsi06g01287 | 396 | PANTHER | WUSCHEL-RELATED HOMEOBOX 1-RELATED | 65 | 396 | - | - | |
Lsi06g01287 | 396 | SUPERFAMILY | Homeodomain-like | 98 | 163 | IPR009057 | - | |
Lsi06g01287 | 396 | MobiDBLite | consensus disorder prediction | 357 | 373 | - | - | |
Lsi06g01287 | 396 | Pfam | Homeodomain | 98 | 158 | IPR001356 | GO:0003677 | |
Lsi06g01287 | 396 | Gene3D | - | 98 | 165 | - | - | |
Lsi06g01287 | 396 | ProSiteProfiles | 'Homeobox' domain profile. | 104 | 159 | IPR001356 | GO:0003677 | |
Lsi06g01287 | 396 | SMART | HOX_1 | 96 | 163 | IPR001356 | GO:0003677 | |
Lsi06g01287 | 396 | Coils | Coil | 265 | 285 | - | - | |
Lsi06g01287 | 396 | MobiDBLite | consensus disorder prediction | 357 | 376 | - | - | |
Lsi06g01287 | 396 | MobiDBLite | consensus disorder prediction | 177 | 193 | - | - | |
Lsi06g01287 | 396 | CDD | homeodomain | 100 | 160 | IPR001356 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00230 | Lsi06g01287 | CCT | |
Lsi02g00230 | Lsi06g01287 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi06g01287 | Lsi-Chr6:23429509 | Lsi07g01059 | Lsi-Chr7:15961952 | 3.70E-13 | dispersed | |
Lsi01g00606 | Lsi-Chr1:4880194 | Lsi06g01287 | Lsi-Chr6:23429509 | 3.23E-28 | transposed | |
Lsi03g00319 | Lsi-Chr3:3862588 | Lsi06g01287 | Lsi-Chr6:23429509 | 7.84E-28 | transposed | |
Lsi08g01489 | Lsi-Chr8:23051021 | Lsi06g01287 | Lsi-Chr6:23429509 | 1.81E-18 | transposed | |
Lsi10g01325 | Lsi-Chr10:17468044 | Lsi06g01287 | Lsi-Chr6:23429509 | 4.96E-29 | transposed | |
Lsi02g01365 | Lsi-Chr2:18450158 | Lsi06g01287 | Lsi-Chr6:23429509 | 9.43E-30 | transposed | |
Lsi02g00230 | Lsi-Chr2:1934707 | Lsi06g01287 | Lsi-Chr6:23429509 | 1.02E-56 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25522 | PF00046 | Homeodomain | 3.00E-19 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi06g01287 | - | - | csv:105434593 | 400.593 |