Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01287 ATGTCAACGCTAAAAGTTTCTAACTTTCTTCCTCTTTTGAGTGTCTTGTTCTTGAGAATGTGGACGTTGGGTTATGATGACAATGGCGGAGAATTTTGCTTCTCCGAAACCTTTAATGGCAGTCGCAAGCTTCGGCCTCTCGTCCCTCGCCCTTTGCCTTCCCTTCGTGCCAATGGCGCTAACTTCTCTTCTCAATATTACCATTTCGCTAATCTTTTTAATGAGCAAAACAAGAGAGAGTTGATGAATAATGAAAAGAGTTCATCAAGTCCAACACCGGTAGTAGTGAGCTCATCAAGATGGAATCCAACGGCGGAGCAGTTGAGAATTTTGGAGGAGCTTTACCGGCGAGGGACAAGAACGCCGTCCGCCGACCAAATCCAACATATCACCGCCCAACTCCGCCGTTACGGCAAAATAGAAGGCAAAAACGTTTTCTATTGGTTTCAAAATCACAAGGCTAGAGAACGTCAAAAACGACGCCGTCAAACTGCCGCTGAACAAACCAAATATTCTGATAATGTCAACACAGAATCAGAAAAAGGGTACGAAATTAAAGAGACAAAGACGAAGAACAGGTGGGGAAGGCCAACACCACCACCCTCTATAATCTCCTCTACTCTACTTTCACAGGTCTCTTTCTTTCTCTCTCTACTTTCTCTCTCCTATTTTACCCTTCAATTAAATTCAATTAAATTAACCCATTTCCTATTTTTCAAAACCCACATGAAAACAAATGAAATCAGAATCTTCCCCATGCAGGAATGTGCAGAACCACAGAGAACAACAAAAGTTGTTGAATTGGAACAAGAAGAAGAAGAAGAACAAGAAACAATAACAGAGTCGTTGGAAAGAGATGGAACATGGAATTACAATAATATATTGAATTGTCAACTCATAAACCCTACAAGGAAGACCCAACATCTAAACGGTGTCGTCGAATCCCGCAACGGAGACCGACGACGCAATGTCATTGACAACAATGACGTCCACAACAATGGCAAAGAAGAATCTAAAACAATGACACTTCAGTTGTTTCCTCTCCGCAGCACAAAGTTTTACAAATACGACAGCGAGAGAGAGGGGCGGCGAGATGATCGACCGGAGATCGATTCCGACATGATTAAAAGCTCCACCTTGTCTCCAAATTGTAGTTTACAGTTCTTTGAGTTTCTTCCACTCAAAAACTGA 1191 42.23 MSTLKVSNFLPLLSVLFLRMWTLGYDDNGGEFCFSETFNGSRKLRPLVPRPLPSLRANGANFSSQYYHFANLFNEQNKRELMNNEKSSSSPTPVVVSSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQTAAEQTKYSDNVNTESEKGYEIKETKTKNRWGRPTPPPSIISSTLLSQVSFFLSLLSLSYFTLQLNSIKLTHFLFFKTHMKTNEIRIFPMQECAEPQRTTKVVELEQEEEEEQETITESLERDGTWNYNNILNCQLINPTRKTQHLNGVVESRNGDRRRNVIDNNDVHNNGKEESKTMTLQLFPLRSTKFYKYDSEREGRRDDRPEIDSDMIKSSTLSPNCSLQFFEFLPLKN 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23429509 23434309 - Lsi06G012870.1 Lsi06g01287 666017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01287 396 MobiDBLite consensus disorder prediction 157 198 - -
Lsi06g01287 396 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 65 396 IPR044555 GO:0003700|GO:0099402
Lsi06g01287 396 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 65 396 - -
Lsi06g01287 396 SUPERFAMILY Homeodomain-like 98 163 IPR009057 -
Lsi06g01287 396 MobiDBLite consensus disorder prediction 357 373 - -
Lsi06g01287 396 Pfam Homeodomain 98 158 IPR001356 GO:0003677
Lsi06g01287 396 Gene3D - 98 165 - -
Lsi06g01287 396 ProSiteProfiles 'Homeobox' domain profile. 104 159 IPR001356 GO:0003677
Lsi06g01287 396 SMART HOX_1 96 163 IPR001356 GO:0003677
Lsi06g01287 396 Coils Coil 265 285 - -
Lsi06g01287 396 MobiDBLite consensus disorder prediction 357 376 - -
Lsi06g01287 396 MobiDBLite consensus disorder prediction 177 193 - -
Lsi06g01287 396 CDD homeodomain 100 160 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00230 Lsi06g01287 CCT
Lsi02g00230 Lsi06g01287 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01287 Lsi-Chr6:23429509 Lsi07g01059 Lsi-Chr7:15961952 3.70E-13 dispersed
Lsi01g00606 Lsi-Chr1:4880194 Lsi06g01287 Lsi-Chr6:23429509 3.23E-28 transposed
Lsi03g00319 Lsi-Chr3:3862588 Lsi06g01287 Lsi-Chr6:23429509 7.84E-28 transposed
Lsi08g01489 Lsi-Chr8:23051021 Lsi06g01287 Lsi-Chr6:23429509 1.81E-18 transposed
Lsi10g01325 Lsi-Chr10:17468044 Lsi06g01287 Lsi-Chr6:23429509 4.96E-29 transposed
Lsi02g01365 Lsi-Chr2:18450158 Lsi06g01287 Lsi-Chr6:23429509 9.43E-30 transposed
Lsi02g00230 Lsi-Chr2:1934707 Lsi06g01287 Lsi-Chr6:23429509 1.02E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25522 PF00046 Homeodomain 3.00E-19 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01287 - - csv:105434593 400.593