Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01294 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTTCAACGTCGCACTTCTTCTTCTTCATCATCTTCTTCTACTTCTAATTTTGGTCCTAATTCTGATTCTTCTGATCCTAATCTTAATTACCCTAATCACCATAAGTTTGATTATGTTGATAATGATGGTGTTAATGGTGACCAATTGTTGAGTAGCGATTTACGCGCCCAATCAACCATTGCCCACAAACGTAAACCTCTAAGGAAACAAACCCAACTCGGAGGAGAAGGGATTCTTGAGCAATTACCTGAGGAGGAGGACGACGATCTTGATTACTCTGCCTTGAAACTCATCAAAGTTCCTAAACGGGTCAATCACTTCAGACATCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACGGAGTATGGAGAGGCCAGCAGATATCAGGTTCAAGAAATAATTGGTAAAGGCAGCTATGGGGTTGTTGGTTCCGCCGTTGATACCCATACTGATGAGAAGGTCGCAATTAAGAAAATTAACGATGTTTTTGAGCATGTTTCTGATGCCACAAGGATTTTAAGAGAAATTAAACTCCTACGGCTGCTCCGTCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAACGATGATCTCACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATTCATACAGCAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATTTGTGATTTTGGACTTGCTCGTGTATCGTTTAATGATGCACCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGCTCTTTTTTCTCAAAACCATCTGGAGCATTAGCAAAGCCAAGTTTGCCAAGTGAGTATTCATTTGTCACGAGCGAAATGCTCACTGGAAAGCCACTGTTTCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGACTGATGTGCTTGGCACACCTTCTGCTGAGTCCACTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGTAACATGAGGAGAAAGCAGCCTGTTCCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTCCGGTTGCTTCAACGCCTGCTTGCATTTGATCCCAAAGATCGTCCCACTGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCAAACGTGGATCGGGAACCATCAACACAACCTATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGATGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAGATGCTACAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTTGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGTAAGGGTGAAAGAAGTTCTCCACTTCAAAGGCAGCATGCTTCATTGCCCAGGGTTTGTGCACCAAAAGATGAAGCTGAACAACACAATGATTTAGAAGGAAGAAATGTTGCTACATCTCTTCAGAGTCCTCCAAAGTCGCAAGGAGATGGTTCCGAAAACGCAAACGGTAACGAACAAAATGGACTAAACAAGCCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGGTGTTAAACCAAGAAAAGACCTAGAGGAGGAACCGATTACAGAGACAAACGACGAGGCAATTGACGGATTGTCTCATAAGGTGTCAGCCTTGCATACTTGA 1938 42.62 MGSGTLVDGVRRWFQRRTSSSSSSSSTSNFGPNSDSSDPNLNYPNHHKFDYVDNDGVNGDQLLSSDLRAQSTIAHKRKPLRKQTQLGGEGILEQLPEEEDDDLDYSALKLIKVPKRVNHFRHPPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAVDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKPSGALAKPSLPSEYSFVTSEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESTARIRNEKARRYLSNMRRKQPVPLTQKFPNADPLALRLLQRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSSPLQRQHASLPRVCAPKDEAEQHNDLEGRNVATSLQSPPKSQGDGSENANGNEQNGLNKPNYSARSLLKSASISASKCIGVKPRKDLEEEPITETNDEAIDGLSHKVSALHT 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23491733 23498139 + Lsi06G012940.1 Lsi06g01294 666024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01294 645 Gene3D Transferase(Phosphotransferase) domain 1 238 470 - -
Lsi06g01294 645 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 118 579 - -
Lsi06g01294 645 SMART serkin_6 152 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01294 645 Pfam Protein kinase domain 152 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01294 645 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 118 579 - -
Lsi06g01294 645 Gene3D Phosphorylase Kinase; domain 1 168 493 - -
Lsi06g01294 645 SUPERFAMILY Protein kinase-like (PK-like) 148 452 IPR011009 -
Lsi06g01294 645 MobiDBLite consensus disorder prediction 560 594 - -
Lsi06g01294 645 CDD STKc_TDY_MAPK 151 492 - -
Lsi06g01294 645 ProSitePatterns MAP kinase signature. 187 290 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi06g01294 645 MobiDBLite consensus disorder prediction 14 43 - -
Lsi06g01294 645 ProSitePatterns Protein kinases ATP-binding region signature. 158 182 IPR017441 GO:0005524
Lsi06g01294 645 MobiDBLite consensus disorder prediction 1 48 - -
Lsi06g01294 645 ProSiteProfiles Protein kinase domain profile. 152 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi06g01294 645 MobiDBLite consensus disorder prediction 616 645 - -
Lsi06g01294 645 MobiDBLite consensus disorder prediction 554 594 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00224 Lsi06g01294 CCT
Lsi02g00224 Lsi06g01294 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01294 Lsi-Chr6:23491733 Lsi09g01365 Lsi-Chr9:21696552 0 dispersed
Lsi04g01162 Lsi-Chr4:16742281 Lsi06g01294 Lsi-Chr6:23491733 0 transposed
Lsi09g01025 Lsi-Chr9:14562240 Lsi06g01294 Lsi-Chr6:23491733 0 transposed
Lsi09g01940 Lsi-Chr9:28192258 Lsi06g01294 Lsi-Chr6:23491733 6.75E-11 transposed
Lsi02g00224 Lsi-Chr2:1876829 Lsi06g01294 Lsi-Chr6:23491733 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83741 PF00069 Pkinase 3.00E-56 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01294 - - csv:101219068 1149.04