Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi06g01296 | ATGTTGGGGTCGATCTTGCCACCACCGGCACCATCGGGAATCACTGGCCTGACAATTTACTTAGCCGGTGCACAAGGGCAGGTGGTTGGTGGAGTCGTAGTGGGTGCGCTCATTGCTTCTGGTCCGGTCGTGATCATGGCAGCAACGTTCATGAACGCGACGTTTGACCGCCTGCCATCGGACGACGAAGAAGTGACCACCGCCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCGGATCTGTATGGAATGCCACAGAATTTGATCACCAATAGTAGTCTTCCGCCGGAATTATACTCTTGGGCGGCGGCTGGTAGAACCATGTCAAAGACTTAA | 360 | 54.17 | MLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVTTAMQSQHYGQNGRSHHHLDVSDLYGMPQNLITNSSLPPELYSWAAAGRTMSKT | 119 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 23506130 | 23506489 | + | Lsi06G012960.1 | Lsi06g01296 | 666026 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi06g01296 | 119 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 3 | 51 | IPR005175 | - | |
| Lsi06g01296 | 119 | Gene3D | - | 1 | 84 | - | - | |
| Lsi06g01296 | 119 | ProSiteProfiles | PPC domain profile profile. | 1 | 73 | IPR005175 | - | |
| Lsi06g01296 | 119 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 118 | IPR014476 | GO:0003680 | |
| Lsi06g01296 | 119 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 | 1 | 118 | - | - | |
| Lsi06g01296 | 119 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 2 | 66 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi06g01296 | Lsi-Chr6:23506130 | Lsi09g01252 | Lsi-Chr9:20189174 | 2.22E-20 | dispersed | |
| Lsi06g01296 | Lsi-Chr6:23506130 | Lsi05g01920 | Lsi-Chr5:26394918 | 1.41E-23 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi06g01296 | - | - | csv:101219306 | 213.001 |