Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi06g01298 ATGGCGACGCCGGAGCTTTCTGAAACCTACGCCTGTGTGCCATCCACCGAGCGAGGCCGAGGAATTTTGATCTCCGGCCACCCCAAAACCAACTCCGTTCTCTACACCAATGGCCGATCCGTCATGATCCTCAATCTCGACAACCCGCTTGAGGTCTCTGTCTATGCCGAGCACGGTTATCCGGCTACGGTTGCCAGGTACTCGCCGAATGGCGAGTGGATCGCGTCTGCTGATGTGTCTGGGACTGTGAGGATTTGGGGCACTCATAGTGGCTTCGTGCTCAAGAAGGAGTTTAAGGTTTTGTCCGGCCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGCTTGTGGGGAGGGGAAGGGGAAATCGTTCGTGCGTGCTTTTATGTGGGATTCGGGTACGAATGTCGGCGAGTTTGATGGTCATTCTAGGCGGGTTCTAAGCTGTGCATTTAAACCAACAAGACCCTTTCGCATTGCCACCTGCGGAGAGGATTTCCTAGTGAATTTTTATGAAGGACCGCCATTTAGATTTAAGCTATCTCTCAGGGACCATTCAAATTTTGTCAACTGTCTAAGGTTCTCTCCAGATGGCAGCAAGTTCATTACTGTAAGCTCTGATAAGAAGGGCATAATATATGATGCGAAGACTGGGGATAAGATGGGAGAACTCTCTGCTGATGATGGGCATAAAGGCAGTATTTATGCTGTCAGCTGGAGTTCGGATGGAAAACGGGTGCTGACTGTCTCTGCCGACAAGACAGCAAAAGTTTGGGAGATATCTGATGATGGTAATGGGAAGTTAGAGAAAACCTTGACTTCTCCTGGCACAGGTGGAGTTGATGATATGCTGGTTGGGTGTTTATGGCAGAATCAACATCTTGTCACAATTTCTCTTGGTGGAACTATTAGTTTGTTTTCAGCTAGTGATCTTGATAAATCCCCAGTCATTTTATCTGGACATATGAAGAATGTCACTTCATTAGTTGTTCTGAAAAGTGACCCTAAAGTTATGTTATCCACTAGCTACGATGGGCTAATTATTAAATGGATTCAAGGTATTGGATACAGTGGCAAGTTGCAAAGAAGAGAAAATTGTCAAATCAAATGTTTTTCAGCTCTTGAAGATGAACTTGTTACGTCCGGTTTTGACAATAAGGTATGGAGAGTTTCTATCAAGGATGGTCAGTGTGGGGAGGCAGAGGCTATTGATGTTGGAAGTCAACCAAAGGACTTGACCCTCGCCGCTCTTTCTCCTGAACTTGCTTTGGTTTCAATTGACTCTGGAGTTGTCTTACTGCGTGGCTCAAACATAGTGTCAACCATCAACCTTGGCTTTACCGTGACAGCATCTGTACTTGCACCTGATGGAAGTGAGGCTATTATAGGTGGTCAAGATGGTAAATTACATATTTATTCCATTGATGGCGACTCGCTCACTGAAGAAGCAACCCTTGAGAAACACAGAGGAGCGATTAGTGTGATACGCTACTCCCCAGATCTTTCAATGTTTGCATCAGGAGATCTCAACCGAGAAGCTATCGTCTGGGATCGTGCATCCCGAGAGGTGAAACTTAAGAATATGTTGTATCACACTGCTCGGATAAATTGCCTCGCTTGGTCTCCTGATAACACCAAGGTTGCAACTGGTTCATTAGATACCTGTGTTATCATATATGAAATTGACAAGCCAGCATCCAATCGTTTAACAGTAAAGGGAGCTCATTTGGGTGGGGTGTACGGACTCGCCTTCACGGATGACTATAGTGTGGTGAGCTCCGGTGAGGATGCTTGTGTTCGTGTTTGGAAGTTGGTTCCTCAGTGA 1836 46.08 MATPELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGYPATVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSADDGHKGSIYAVSWSSDGKRVLTVSADKTAKVWEISDDGNGKLEKTLTSPGTGGVDDMLVGCLWQNQHLVTISLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVMLSTSYDGLIIKWIQGIGYSGKLQRRENCQIKCFSALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLAALSPELALVSIDSGVVLLRGSNIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSIDGDSLTEEATLEKHRGAISVIRYSPDLSMFASGDLNREAIVWDRASREVKLKNMLYHTARINCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTVKGAHLGGVYGLAFTDDYSVVSSGEDACVRVWKLVPQ 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23519986 23525272 + Lsi06G012980.1 Lsi06g01298 666028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 265 IPR001680 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 532 573 IPR001680 GO:0005515
Lsi06g01298 611 CDD WD40 51 354 - -
Lsi06g01298 611 SUPERFAMILY WD40 repeat-like 27 354 IPR036322 GO:0005515
Lsi06g01298 611 PANTHER ACTIN-INTERACTING PROTEIN 1-1 5 611 - -
Lsi06g01298 611 SUPERFAMILY WD40 repeat-like 295 607 IPR036322 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 265 - -
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 521 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 269 311 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 568 607 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 221 263 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 482 521 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 179 218 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 315 355 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 439 477 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 91 135 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 136 176 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 48 87 IPR001680 GO:0005515
Lsi06g01298 611 SMART WD40_4 526 564 IPR001680 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Lsi06g01298 611 Gene3D - 9 607 IPR015943 GO:0005515
Lsi06g01298 611 Pfam WD domain, G-beta repeat 577 607 IPR001680 GO:0005515
Lsi06g01298 611 Pfam WD domain, G-beta repeat 535 563 IPR001680 GO:0005515
Lsi06g01298 611 Pfam WD domain, G-beta repeat 232 262 IPR001680 GO:0005515
Lsi06g01298 611 Pfam WD domain, G-beta repeat 185 213 IPR001680 GO:0005515
Lsi06g01298 611 Pfam WD domain, G-beta repeat 65 86 IPR001680 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 489 521 - -
Lsi06g01298 611 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 5 611 - -
Lsi06g01298 611 ProSitePatterns Trp-Asp (WD) repeats signature. 250 264 IPR019775 -
Lsi06g01298 611 Gene3D - 13 339 IPR015943 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 611 IPR001680 GO:0005515
Lsi06g01298 611 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 576 611 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi06g01298 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1211.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01298 Lsi-Chr6:23519986 Lsi03g01197 Lsi-Chr3:22389501 9.65E-06 dispersed
Lsi06g01298 Lsi-Chr6:23519986 Lsi02g02285 Lsi-Chr2:29422484 1.10E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi06g01298 Lsi_Chr06 FPKM 8.16746 10.308012 4.209283 3.314991 5.967601 5.593343 6.322355 2.242403 1.792334 1.670218